Gene loci information

Transcript annotation

  • This transcript has been annotated as Deoxynucleoside kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11159 g11159.t5 TTS g11159.t5 14368486 14368486
chr_1 g11159 g11159.t5 isoform g11159.t5 14369365 14371147
chr_1 g11159 g11159.t5 exon g11159.t5.exon1 14369365 14369773
chr_1 g11159 g11159.t5 exon g11159.t5.exon2 14369884 14370513
chr_1 g11159 g11159.t5 cds g11159.t5.CDS1 14369938 14370492
chr_1 g11159 g11159.t5 exon g11159.t5.exon3 14370645 14370782
chr_1 g11159 g11159.t5 exon g11159.t5.exon4 14371123 14371147
chr_1 g11159 g11159.t5 TSS g11159.t5 14371251 14371251

Sequences

>g11159.t5 Gene=g11159 Length=1202
ATGGTGGTTTATAATCATGCATTGAGACGCTTGGTTTCATCTAAATTAATTAACAATTTT
ACAATCAGAATGGCTTCATTCTCAGTGAATAAAAAGGCTCCATTTACTGTCTTTGTTGAG
GGCAATATAGGAAGTGGAAAAACGACTTTTCTCAATCATTTTAGGAGTAAATCTGTTTGA
CTTGATGTATAAGAATCCAGATAGATGGGCTATGACTTTTCAAAACTATGTTACTTTGAC
TATGCTTAAAAACCACATTAAGATAACTGACAAGCCTGTTAAACTGATGGAACGATCGAT
GTACAGTGCTCGTTACTGTTTCGTTGAGAAAATGCTTGCAAGTGGAATTCTTCAAGAAGG
AATGTATCACGTGCTTCAAGAGTGGTATAATTTTATTCACGAACATCACCAAATTCAATG
TGATCTCATTGTCTATTTAAGAACAAGTCCAGAAGTTGTATATGAACGTATGAAAAAACG
TGGAAGAATCGAAGAAAGTGGTGTCTCATTTCAATATTTAAAAGATTTGCATGAGCTTCA
TGAAAATTGGCTAATTCATGGAAAATTTTATCGACCAGCACAAGTGTTAGTACTCGATGC
AAATTTAGATTTAGATGGTATTGGAGCCGAATATGTTAGATCAGAATCTAGTATATTACG
ACCTATTGTCATTGAAAATACGAATCATCAAATGGGTATCACTGCATCGCCTAGTAAACG
TGAACGAGAGTTGTATTGAAAAAATCAAAGTGCTATCGTCAACATTTTATGCTTTATTAT
ACTTCATACCAGAATTTAGTCAGCATTTATTGCTTTTTTACAAGTGTTTTCTTGTGTGAT
TTACATACTTATTTTTGGTAATATGAAACGAATATAACAATTCATATTAATCGTAATTAA
CCAACTTTCTTTTACTATTACCTATTAATATTAAGTTCAAACATTTCCAATAAAGTTTGT
CTTATGCACTTTTTTGAAATAATCAGCAAAAATTAAATTTTAATACATCATCATCACTTA
ACACTTTAAGAGTTAATGTATAAGTAGAATGTAGGACACAATGAGAATAATATTAAAACA
TTGTTTTTTTTTTCAAAATTAAAATGTGGATCAAAAAATAAAAGGAAAATCTCAACGGAA
AACATTTAAATTGATTTCTTTTTTCATGCACGTATCACATGTTTACCAAGAATTGTATAC
AG

>g11159.t5 Gene=g11159 Length=184
MYKNPDRWAMTFQNYVTLTMLKNHIKITDKPVKLMERSMYSARYCFVEKMLASGILQEGM
YHVLQEWYNFIHEHHQIQCDLIVYLRTSPEVVYERMKKRGRIEESGVSFQYLKDLHELHE
NWLIHGKFYRPAQVLVLDANLDLDGIGAEYVRSESSILRPIVIENTNHQMGITASPSKRE
RELY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g11159.t5 CDD cd01673 dNK 1 140 0
5 g11159.t5 Gene3D G3DSA:3.40.50.300 - 1 159 0
2 g11159.t5 PANTHER PTHR10513:SF24 THYMIDINE KINASE 2, MITOCHONDRIAL 1 150 0
3 g11159.t5 PANTHER PTHR10513 DEOXYNUCLEOSIDE KINASE 1 150 0
6 g11159.t5 PIRSF PIRSF000705 DNK 1 169 0
1 g11159.t5 Pfam PF01712 Deoxynucleoside kinase 1 143 0
4 g11159.t5 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1 168 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0019136 deoxynucleoside kinase activity MF
GO:0005524 ATP binding MF
GO:0006139 nucleobase-containing compound metabolic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed