General information for g11174.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11174 is located on chr_1: 14420837..14421693 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11174 | g11174.t2 | isoform | g11174.t2 | 14401258 | 14420837 |
| chr_1 | g11174 | g11174.t2 | exon | g11174.t2.exon1 | 14401258 | 14401302 |
| chr_1 | g11174 | g11174.t2 | cds | g11174.t2.CDS1 | 14401258 | 14401302 |
| chr_1 | g11174 | g11174.t2 | exon | g11174.t2.exon2 | 14401366 | 14401424 |
| chr_1 | g11174 | g11174.t2 | cds | g11174.t2.CDS2 | 14401366 | 14401424 |
| chr_1 | g11174 | g11174.t2 | exon | g11174.t2.exon3 | 14401492 | 14401621 |
| chr_1 | g11174 | g11174.t2 | cds | g11174.t2.CDS3 | 14401492 | 14401621 |
| chr_1 | g11174 | g11174.t2 | exon | g11174.t2.exon4 | 14401693 | 14401787 |
| chr_1 | g11174 | g11174.t2 | cds | g11174.t2.CDS4 | 14401693 | 14401787 |
| chr_1 | g11174 | g11174.t2 | exon | g11174.t2.exon5 | 14403954 | 14404120 |
| chr_1 | g11174 | g11174.t2 | cds | g11174.t2.CDS5 | 14403954 | 14404120 |
| chr_1 | g11174 | g11174.t2 | exon | g11174.t2.exon6 | 14419993 | 14420837 |
| chr_1 | g11174 | g11174.t2 | cds | g11174.t2.CDS6 | 14419993 | 14420837 |
| chr_1 | g11174 | g11174.t2 | TSS | g11174.t2 | 14421693 | 14421693 |
| chr_1 | g11174 | g11174.t2 | TTS | g11174.t2 | NA | NA |
Sequences
>g11174.t2 Gene=g11174 Length=1341
ATGGCCTTTAACAATACAAGCAGTGGTGCTCAGTCACAACAAACAAATCAACTTCAGCAA
GGTGCTGCAGATGATGATGCACTACAACAGCAACAAAAAAAGAATAATAATCTCATAATA
TTGGTTGACAAGGATTCAAATGACAAGCTTGATGAGCTTTTTGAAAAGACGTTGAACAAT
ACTACGTCTCTTCATAAGCCTTATAAAATGCGCAAATTGCCAGCGTCATTCTTTAAGCCA
CCACAATCAGGCTCAAAATCGCCATCGGTTTCACATTCGCGCGAAAATTCTGCTGACTCT
GCATTTGGTTCAGGCACAACCATATTGAATAATGTTAATAATCAGAATAACAATAACAAT
AGTAATAATAGTGTAACTCCACATCCAGCTATAGCACCAGCAACAGCATCGGCCATAAAT
GGTCTCGCCATACACCACTCGCGTGCTCACAGTAGCCCCGCAAGCTTGGGCAAGTTGCCT
CTCAACATAAACCTCAATTTGAGTGCCTTAAATCTCGGAACAGTGACACCAACAAATAGT
CCTAGTCCGAATCATTCGACAACAAATATCAACAGCAGTAGCAACATGACTAACAATTCC
AATAAAGCAAATACAAACAATATCTTGAGTAGTAACGCTGTTGGTGGCGCAGGAGCGGTC
AATAATCAGACCAATACTAACAACAATTTACCACACAACATAAGCTTGGAAAAAACTTTG
CAACATATTCACAGTCGTGGACGCAGCTACGATATTCCAAGTTTGCAGCATCAATTGCAA
TTCAGTGAACTGCCACCAGGCTGGGAACAAGCAAAGACATCAGACGGAAAAGTTTATTAT
ATCAATCATAATGATCGTACAACACAATGGGAAGATCCAAGAACTCAAATGGCTGCTCAA
GCTCTATCACATGGAAATTTGTTCTCATCATCTTCATCAGAACACTCAAGTGTAGAAACA
CTTTTCAGCACGCCCACACAACTTAGCTCATTAGGATCATCGTCACAAAACGCTAATCAA
GAATGGGAACAAAATCTCCGCATTTATAATTTGCAATTGGAACGTGAACGTTTGAAGACA
CGCAGACAGGAAATTGCTAAATTAAATATTGGAGAAGATCCATTTCTTCCGGGAATTACT
GATCATACACGACAAGAAAGTGGTGATAGTGGTCTTTCTTTATCTCACACACCCGATTTC
TTATGCGATGACAGTATGGATGGACTTAGTGTTAGTGTGACTGATTCAACAATGGAAGCT
TTTAATGAAGCAATGGAGACACCAGATGAATTTATGCTAAATGATCCTCTTTTACTTGAG
AAAATTGGTGGTCTGATATGA
>g11174.t2 Gene=g11174 Length=446
MAFNNTSSGAQSQQTNQLQQGAADDDALQQQQKKNNNLIILVDKDSNDKLDELFEKTLNN
TTSLHKPYKMRKLPASFFKPPQSGSKSPSVSHSRENSADSAFGSGTTILNNVNNQNNNNN
SNNSVTPHPAIAPATASAINGLAIHHSRAHSSPASLGKLPLNINLNLSALNLGTVTPTNS
PSPNHSTTNINSSSNMTNNSNKANTNNILSSNAVGGAGAVNNQTNTNNNLPHNISLEKTL
QHIHSRGRSYDIPSLQHQLQFSELPPGWEQAKTSDGKVYYINHNDRTTQWEDPRTQMAAQ
ALSHGNLFSSSSSEHSSVETLFSTPTQLSSLGSSSQNANQEWEQNLRIYNLQLERERLKT
RRQEIAKLNIGEDPFLPGITDHTRQESGDSGLSLSHTPDFLCDDSMDGLSVSVTDSTMEA
FNEAMETPDEFMLNDPLLLEKIGGLI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g11174.t2 | CDD | cd00201 | WW | 265 | 294 | 8.46031E-15 |
| 5 | g11174.t2 | Coils | Coil | Coil | 339 | 359 | - |
| 4 | g11174.t2 | Gene3D | G3DSA:2.20.70.10 | - | 259 | 300 | 1.1E-19 |
| 11 | g11174.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - |
| 10 | g11174.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 99 | - |
| 9 | g11174.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 99 | - |
| 2 | g11174.t2 | PANTHER | PTHR17616 | YES-ASSOCIATED PROTEIN YAP1 FAMILY MEMBER | 10 | 344 | 7.1E-38 |
| 1 | g11174.t2 | Pfam | PF00397 | WW domain | 264 | 293 | 1.3E-13 |
| 8 | g11174.t2 | ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 268 | 293 | - |
| 12 | g11174.t2 | ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 262 | 295 | 18.461 |
| 7 | g11174.t2 | SMART | SM00456 | ww_5 | 263 | 295 | 5.7E-14 |
| 3 | g11174.t2 | SUPERFAMILY | SSF51045 | WW domain | 261 | 298 | 6.68E-15 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K16687 (transcriptional coactivator YAP1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
