General information for g11175.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Serine/threonine-protein kinase 3.
Parent gene
- The parent gene g11175 is located on chr_1: 14424338..14425152 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11175 | g11175.t2 | TSS | g11175.t2 | 14422051 | 14422051 |
| chr_1 | g11175 | g11175.t2 | isoform | g11175.t2 | 14422240 | 14423383 |
| chr_1 | g11175 | g11175.t2 | exon | g11175.t2.exon1 | 14422240 | 14422774 |
| chr_1 | g11175 | g11175.t2 | cds | g11175.t2.CDS1 | 14422706 | 14422774 |
| chr_1 | g11175 | g11175.t2 | exon | g11175.t2.exon2 | 14422891 | 14423162 |
| chr_1 | g11175 | g11175.t2 | cds | g11175.t2.CDS2 | 14422891 | 14423162 |
| chr_1 | g11175 | g11175.t2 | exon | g11175.t2.exon3 | 14423224 | 14423383 |
| chr_1 | g11175 | g11175.t2 | cds | g11175.t2.CDS3 | 14423224 | 14423383 |
| chr_1 | g11175 | g11175.t2 | TTS | g11175.t2 | NA | NA |
Sequences
>g11175.t2 Gene=g11175 Length=967
ATGTCGAACAATAATACCAAGAGGTAAGTTAATTTTTCAAGGTTCTTCTCTTTTACTTTC
TTTACTTTTTCAATATAAACCAAAATCCGATTATGATTTATTTATGGAAATCTACTGATT
TTACTTTATTCACACTATCTTATAATGTTTGCTTGCTTGCATGTCTGTGTATGTAAATTA
TTTACTCAATTAACAAATCTTTTAGATCATTGAAAAAATTATCAGAGGAATCACTCACAC
GGCAGCCGGAGGAAGTTTTTGATATTATCTGCAAATTGGGTGAAGGCAGTTATGGAAGTG
TATATAAGGCCTTACACAAAGAAAGTGATCAAGTTAGTTGCACATGAGTTCCTTTTTATT
TTCATGCATGCATTCATGGAAAAAAAATTTTACTTAATAGATTTTAGCCATTAAGCAAGT
TCCCGTTGATACAGATCTTCAGGAAATTATTAAAGAAATCTCAATAATGCAGCAATGCGA
TTCGCCATATGTAGTTAAATATTATGGAAGTTATTTTAAAAACACTGATTTGTGGATTGT
TATGGAATATTGCGGAGCCGGTAGTGTTTCTGATATAATGAGATTACGCAAAAAGACGTT
GACTGAAGATGAAATTTCTACAATACTTAGTGATACGCTAAAGGGTCTTGAGTATCTGCA
CTTGCGAAGGAAAATTCATAGGGATATTAAAGCTGGAAATATTCTCTTAAATTCAGAAGG
TCATGCCAAATTAGCTGATTTTGGTGTTGCTGGTCAATTAACAGATACTATGGCAAAGAG
GAATACAGTTATTGGCACACCTTTTTGGATGGCACCAGAAGTTATTGAAGAAATTGGTTA
TGATTGTGTAGCAGATATTTGGTCTTTAGGAATAACTGCATTAGAAATGGCAGAAGGGAA
GCCACCTTATGGTAAATACAAAAAATATCATATTGAGGATATTATTTTAAAAGAGAATTT
ATTTAGG
>g11175.t2 Gene=g11175 Length=167
MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLTEDEISTILSDTLKG
LEYLHLRRKIHRDIKAGNILLNSEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI
EEIGYDCVADIWSLGITALEMAEGKPPYGKYKKYHIEDIILKENLFR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g11175.t2 | Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 28 | 0.000 |
| 7 | g11175.t2 | Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 29 | 165 | 0.000 |
| 2 | g11175.t2 | PANTHER | PTHR48015:SF32 | SERINE/THREONINE-PROTEIN KINASE 4 | 1 | 150 | 0.000 |
| 3 | g11175.t2 | PANTHER | PTHR48015 | SERINE/THREONINE-PROTEIN KINASE TAO | 1 | 150 | 0.000 |
| 1 | g11175.t2 | Pfam | PF00069 | Protein kinase domain | 1 | 155 | 0.000 |
| 8 | g11175.t2 | ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 167 | 35.764 |
| 5 | g11175.t2 | SMART | SM00220 | serkin_6 | 1 | 166 | 0.000 |
| 4 | g11175.t2 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 165 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0004672 | protein kinase activity | MF |
| GO:0006468 | protein phosphorylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
