Gene loci information

Transcript annotation

  • This transcript has been annotated as Adenosylhomocysteinase-like 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11186 g11186.t7 TTS g11186.t7 14472515 14472515
chr_1 g11186 g11186.t7 isoform g11186.t7 14473269 14479392
chr_1 g11186 g11186.t7 exon g11186.t7.exon1 14473269 14473396
chr_1 g11186 g11186.t7 cds g11186.t7.CDS1 14473269 14473396
chr_1 g11186 g11186.t7 exon g11186.t7.exon2 14473478 14473750
chr_1 g11186 g11186.t7 cds g11186.t7.CDS2 14473478 14473750
chr_1 g11186 g11186.t7 exon g11186.t7.exon3 14473852 14474127
chr_1 g11186 g11186.t7 cds g11186.t7.CDS3 14473852 14474127
chr_1 g11186 g11186.t7 exon g11186.t7.exon4 14474224 14474626
chr_1 g11186 g11186.t7 cds g11186.t7.CDS4 14474224 14474626
chr_1 g11186 g11186.t7 exon g11186.t7.exon5 14474893 14475029
chr_1 g11186 g11186.t7 cds g11186.t7.CDS5 14474893 14475029
chr_1 g11186 g11186.t7 exon g11186.t7.exon6 14475098 14475244
chr_1 g11186 g11186.t7 cds g11186.t7.CDS6 14475098 14475244
chr_1 g11186 g11186.t7 exon g11186.t7.exon7 14476077 14476179
chr_1 g11186 g11186.t7 cds g11186.t7.CDS7 14476077 14476179
chr_1 g11186 g11186.t7 exon g11186.t7.exon8 14477827 14477967
chr_1 g11186 g11186.t7 cds g11186.t7.CDS8 14477827 14477967
chr_1 g11186 g11186.t7 exon g11186.t7.exon9 14479391 14479392
chr_1 g11186 g11186.t7 TSS g11186.t7 14479517 14479517

Sequences

>g11186.t7 Gene=g11186 Length=1610
AGATGCACCAAATAAATTCCACCTCGACAATTGGAGAGTCAAATCTCTCGCATAATCCAA
GCAATGCTTCGATGGCACCAAAATCAGCAACCGTTCAATTTGTGAGTGACTCTCCCATAA
CCGATCCAGGACAGACTACCAAGGAAAAGGATAAAGATGTGAAAAACATTTCTAGTGCCC
TTAAAAAGTCAAGTCGCTATCGTAGTCGCAGTCTTTCAGCAAGTTCAACTGACTCATATA
GCTCTGCATCATATACAGGAAGTTCAAGCGAGGACGATGATGCATCACCTCGTGAAAAAA
TTCAAAGCAATTCGAAAGGATTTGCGGACTTTTGTGTAAGAAATATTCAACAACATGCGT
TTGGCCGGCGTGAAATTGAAATTGCCGAGCAAGAGATGCCAGGAATTATGGCATTAAGGA
AACGTGCTTCCGAAGATAAGCCCCTTAAGAATGCTAAAATTGTTGGATGCACACATGTTA
ATGCGCAAACGGCTGTTCTTATTGAAACTTTAGCAGCACTCGGAGCTTCTGTTCGTTGGG
CAGCCTGCAACATTTATTCAACACAAAATGAAGTGGCCGCAGCTCTAGCCGAAAGTGGAT
TTAGTGTATTTGCGTGGCGCGGCGAGACGGAAGAAGATTTCTGGTGGTGTATTGATAAAT
GTGTTAATGCAGAAAATTGGCAACCAAACCTGATACTCGATGATGGTGGTGATGCAACGC
ATTTAATGTTGAAAAAATATCCAGCCATGTTTAAAATGGTGAAGGGTATCGTTGAAGAGA
GTGTCACAGGCGTACATCGACTTTATCAATTGTCTAAAAGTGGCAAACTGACAGTTCCTG
CGATGAATGTCCATGATTCTGTTATCAAGACTAAATTTGATAATTTCTATAGTTGCAAAG
AGAGCATAATTGATAGTTTAAAACGTTCGACTGACATTATGTTTTCGGGAAAACAAGTCG
CACTATGTGGATATGGTGAAGTCGGTAAAGGTTGTTCGCAAGCTTTAAAAGCACTCGGAT
GCATCGTCTACGTCACCGAAATCGATCCTATTTGTGCGCTACAAGCAAGCGTTGATGGCT
TTCGTGTTGTTAAGCTAAATGAGATAATTCGAAATGTTGATATCGTAATCACGACTACTG
GCAATAAAAGCGTAGTTACTCGAGAGCACATGGAGAAAATGAAGAATGGCTGCATTGTAT
GCAATATGGGCCATTCAAACACAGAAATCGATGTTAAAGATCTCCGCACGCCAGATTTGA
CATGGGAAAAAGTTCGTTCACAGGTCGATCATATCATTTTTCCTGATGGAAAGCGAATAG
TTTTATTAGCTGAAGGACGTTTGGTTAATCTTTCTTGCTCAAGTGTTCCATCATTTTGTG
CTAGTATCACATCTGCAACGCAAGCATTAGCTTTAATTGAACTTTATAATGCACAGGCAG
GTCGCTATAAATGCGACGTTTATTTATTATCAAGAAAAATGGACGAGTATGTCGCGATTT
TACATTTACCAACATTTGATGCACATTTAACAGAGCTTACAGATGAGCAAGCTAAATACA
TGGGTCTCAGCAAAGCTGGTCCTTTTAAGCCCAACTATTATCGTTATTAA

>g11186.t7 Gene=g11186 Length=535
MHQINSTSTIGESNLSHNPSNASMAPKSATVQFVSDSPITDPGQTTKEKDKDVKNISSAL
KKSSRYRSRSLSASSTDSYSSASYTGSSSEDDDASPREKIQSNSKGFADFCVRNIQQHAF
GRREIEIAEQEMPGIMALRKRASEDKPLKNAKIVGCTHVNAQTAVLIETLAALGASVRWA
ACNIYSTQNEVAAALAESGFSVFAWRGETEEDFWWCIDKCVNAENWQPNLILDDGGDATH
LMLKKYPAMFKMVKGIVEESVTGVHRLYQLSKSGKLTVPAMNVHDSVIKTKFDNFYSCKE
SIIDSLKRSTDIMFSGKQVALCGYGEVGKGCSQALKALGCIVYVTEIDPICALQASVDGF
RVVKLNEIIRNVDIVITTTGNKSVVTREHMEKMKNGCIVCNMGHSNTEIDVKDLRTPDLT
WEKVRSQVDHIIFPDGKRIVLLAEGRLVNLSCSSVPSFCASITSATQALALIELYNAQAG
RYKCDVYLLSRKMDEYVAILHLPTFDAHLTELTDEQAKYMGLSKAGPFKPNYYRY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g11186.t7 CDD cd00401 SAHH 119 522 0.0
10 g11186.t7 Gene3D G3DSA:3.40.50.1480 - 92 244 3.6E-67
9 g11186.t7 Gene3D G3DSA:3.40.50.1480 - 245 300 1.6E-18
7 g11186.t7 Gene3D G3DSA:3.40.50.720 - 301 453 1.9E-70
8 g11186.t7 Gene3D G3DSA:3.40.50.1480 - 454 535 3.4E-28
19 g11186.t7 MobiDBLite mobidb-lite consensus disorder prediction 1 42 -
20 g11186.t7 MobiDBLite mobidb-lite consensus disorder prediction 1 102 -
17 g11186.t7 MobiDBLite mobidb-lite consensus disorder prediction 43 58 -
18 g11186.t7 MobiDBLite mobidb-lite consensus disorder prediction 59 90 -
3 g11186.t7 PANTHER PTHR23420 ADENOSYLHOMOCYSTEINASE 57 535 1.9E-277
4 g11186.t7 PANTHER PTHR23420:SF2 ADENOSYLHOMOCYSTEINASE 3 57 535 1.9E-277
11 g11186.t7 PIRSF PIRSF001109 SAHH 96 535 8.0E-182
1 g11186.t7 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 109 244 6.0E-65
2 g11186.t7 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 294 454 4.1E-77
14 g11186.t7 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 181 195 -
13 g11186.t7 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 316 332 -
16 g11186.t7 SMART SM00996 AdoHcyase_2 109 534 1.5E-249
15 g11186.t7 SMART SM00997 AdoHcyase_NAD_2 294 455 2.3E-97
6 g11186.t7 SUPERFAMILY SSF52283 Formate/glycerate dehydrogenase catalytic domain-like 107 535 1.25E-102
5 g11186.t7 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 294 453 1.86E-62
21 g11186.t7 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 110 527 1.2E-153

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004013 adenosylhomocysteinase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values