Gene loci information

Transcript annotation

  • This transcript has been annotated as Adenosylhomocysteinase-like 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11186 g11186.t8 TTS g11186.t8 14472828 14472828
chr_1 g11186 g11186.t8 isoform g11186.t8 14473737 14474616
chr_1 g11186 g11186.t8 exon g11186.t8.exon1 14473737 14473750
chr_1 g11186 g11186.t8 cds g11186.t8.CDS1 14473737 14473750
chr_1 g11186 g11186.t8 exon g11186.t8.exon2 14473852 14474127
chr_1 g11186 g11186.t8 cds g11186.t8.CDS2 14473852 14474127
chr_1 g11186 g11186.t8 exon g11186.t8.exon3 14474224 14474616
chr_1 g11186 g11186.t8 cds g11186.t8.CDS3 14474224 14474431
chr_1 g11186 g11186.t8 TSS g11186.t8 14475396 14475396

Sequences

>g11186.t8 Gene=g11186 Length=683
CAGCCTGCAACATTTATTCAACACAAAATGAAGTGGCCGCAGCTCTAGCCGAAAGTGGAT
TTAGTGTATTTGCGTGGCGCGGCGAGACGGAAGAAGATTTCTGGTGGTGTATTGATAAAT
GTGTTAATGCAGAAAATTGGCAACCAAACCTGATACTCGATGATGGTGGTGATGCAACGC
ATTTAATGTTGAAAAAATATCCAGCCATGTTTAAAATGGTGAAGGGTATCGTTGAAGAGA
GTGTCACAGGCGTACATCGACTTTATCAATTGTCTAAAAGTGGCAAACTGACAGTTCCTG
CGATGAATGTCCATGATTCTGTTATCAAGACTAAATTTGATAATTTCTATAGTTGCAAAG
AGAGCATAATTGATAGTTTAAAACGTTCGACTGACATTATGTTTTCGGGAAAACAAGTCG
CACTATGTGGATATGGTGAAGTCGGTAAAGGTTGTTCGCAAGCTTTAAAAGCACTCGGAT
GCATCGTCTACGTCACCGAAATCGATCCTATTTGTGCGCTACAAGCAAGCGTTGATGGCT
TTCGTGTTGTTAAGCTAAATGAGATAATTCGAAATGTTGATATCGTAATCACGACTACTG
GCAATAAAAGCGTAGTTACTCGAGAGCACATGGAGAAAATGAAGAATGGCTGCATTGTAT
GCAATATGGGCCATTCAAACACA

>g11186.t8 Gene=g11186 Length=166
MLKKYPAMFKMVKGIVEESVTGVHRLYQLSKSGKLTVPAMNVHDSVIKTKFDNFYSCKES
IIDSLKRSTDIMFSGKQVALCGYGEVGKGCSQALKALGCIVYVTEIDPICALQASVDGFR
VVKLNEIIRNVDIVITTTGNKSVVTREHMEKMKNGCIVCNMGHSNT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g11186.t8 Gene3D G3DSA:3.40.50.1480 - 2 57 2.4E-17
10 g11186.t8 Gene3D G3DSA:3.40.50.720 - 58 166 6.4E-50
3 g11186.t8 PANTHER PTHR23420 ADENOSYLHOMOCYSTEINASE 2 166 2.3E-97
4 g11186.t8 PANTHER PTHR23420:SF2 ADENOSYLHOMOCYSTEINASE 3 2 166 2.3E-97
1 g11186.t8 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 3 52 1.0E-18
2 g11186.t8 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 53 165 6.0E-56
9 g11186.t8 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 75 91 -
8 g11186.t8 SMART SM00996 AdoHcyase_2 1 166 2.6E-6
7 g11186.t8 SMART SM00997 AdoHcyase_NAD_2 53 166 4.4E-51
6 g11186.t8 SUPERFAMILY SSF52283 Formate/glycerate dehydrogenase catalytic domain-like 2 52 7.06E-15
5 g11186.t8 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 53 164 6.77E-46

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004013 adenosylhomocysteinase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values