General information for g11191.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11191 is located on chr_1: 14504925..14505826 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11191 | g11191.t1 | TTS | g11191.t1 | 14504873 | 14504873 |
| chr_1 | g11191 | g11191.t1 | isoform | g11191.t1 | 14504925 | 14505826 |
| chr_1 | g11191 | g11191.t1 | exon | g11191.t1.exon1 | 14504925 | 14505017 |
| chr_1 | g11191 | g11191.t1 | cds | g11191.t1.CDS1 | 14504925 | 14505017 |
| chr_1 | g11191 | g11191.t1 | exon | g11191.t1.exon2 | 14505075 | 14505374 |
| chr_1 | g11191 | g11191.t1 | cds | g11191.t1.CDS2 | 14505075 | 14505374 |
| chr_1 | g11191 | g11191.t1 | exon | g11191.t1.exon3 | 14505436 | 14505567 |
| chr_1 | g11191 | g11191.t1 | cds | g11191.t1.CDS3 | 14505436 | 14505567 |
| chr_1 | g11191 | g11191.t1 | exon | g11191.t1.exon4 | 14505737 | 14505826 |
| chr_1 | g11191 | g11191.t1 | cds | g11191.t1.CDS4 | 14505737 | 14505826 |
| chr_1 | g11191 | g11191.t1 | TSS | g11191.t1 | 14505851 | 14505851 |
Sequences
>g11191.t1 Gene=g11191 Length=615
ATGGACGTAAGAAACAAAATTTTGACTCTTTTTGCTGTTGTTTTGTTATCAACTGTAAAC
TATATATGTGGACAAAACTATAATGATAAATTGCATATCGATATTCATTATGAATCACGA
TGTCCTGATTCACGAAACTTCATTAAAAACCAACTTGTGCCTGCATATTCAAAAATAAAG
GATAAAGTTGTATTGAATTATATTCCTTTCGGCAAAGCTTATAGTTATAATTCAAATAAT
CGTGTAAGATTCAGTTGTCAGCACGGAGAGCGTGAATGTGATGGAAATGTATTTCAAGCG
TGTGTACTTGATTTTATTGGGGTAGAAAATCAAGACTCACAATTGAGTTTTGTTGCGTGT
GCAATGGACTTTTCTAAAAACCCTTTTAATTGTGCTCAAAATATGGGAATTGATCTGATT
AAAATAAATGAATGCACTAATGGAGAAAAAGGTATCCAATTACAAATTGATGCTGAGAAA
TATTCTACACCTCATATCAGACGATCTGGATTTGTACCAACAATAACTTATAATAACAAA
TACAACTCTATTGACTTTTGGGATTCTCTAGATGATTTTGAAAGTGTTGTAACTCAAAAA
TTAGGAAACTTATGA
>g11191.t1 Gene=g11191 Length=204
MDVRNKILTLFAVVLLSTVNYICGQNYNDKLHIDIHYESRCPDSRNFIKNQLVPAYSKIK
DKVVLNYIPFGKAYSYNSNNRVRFSCQHGERECDGNVFQACVLDFIGVENQDSQLSFVAC
AMDFSKNPFNCAQNMGIDLIKINECTNGEKGIQLQIDAEKYSTPHIRRSGFVPTITYNNK
YNSIDFWDSLDDFESVVTQKLGNL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g11191.t1 | PANTHER | PTHR13234:SF56 | GH19763P | 17 | 199 | 3.7E-43 |
| 3 | g11191.t1 | PANTHER | PTHR13234 | GAMMA-INTERFERON INDUCIBLE LYSOSOMAL THIOL REDUCTASE GILT | 17 | 199 | 3.7E-43 |
| 1 | g11191.t1 | Pfam | PF03227 | Gamma interferon inducible lysosomal thiol reductase (GILT) | 33 | 134 | 4.2E-30 |
| 6 | g11191.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 24 | - |
| 7 | g11191.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 7 | - |
| 8 | g11191.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 8 | 19 | - |
| 9 | g11191.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 20 | 24 | - |
| 5 | g11191.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 25 | 204 | - |
| 4 | g11191.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 24 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K08059 (interferon, gamma-inducible protein 30)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
