Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11191 g11191.t9 TTS g11191.t9 14504873 14504873
chr_1 g11191 g11191.t9 isoform g11191.t9 14504925 14505826
chr_1 g11191 g11191.t9 exon g11191.t9.exon1 14504925 14504987
chr_1 g11191 g11191.t9 cds g11191.t9.CDS1 14504925 14504987
chr_1 g11191 g11191.t9 exon g11191.t9.exon2 14505084 14505374
chr_1 g11191 g11191.t9 cds g11191.t9.CDS2 14505084 14505374
chr_1 g11191 g11191.t9 exon g11191.t9.exon3 14505436 14505567
chr_1 g11191 g11191.t9 cds g11191.t9.CDS3 14505436 14505567
chr_1 g11191 g11191.t9 exon g11191.t9.exon4 14505737 14505826
chr_1 g11191 g11191.t9 cds g11191.t9.CDS4 14505737 14505826
chr_1 g11191 g11191.t9 TSS g11191.t9 14505851 14505851

Sequences

>g11191.t9 Gene=g11191 Length=576
ATGGACGTAAGAAACAAAATTTTGACTCTTTTTGCTGTTGTTTTGTTATCAACTGTAAAC
TATATATGTGGACAAAACTATAATGATAAATTGCATATCGATATTCATTATGAATCACGA
TGTCCTGATTCACGAAACTTCATTAAAAACCAACTTGTGCCTGCATATTCAAAAATAAAG
GATAAAGTTGTATTGAATTATATTCCTTTCGGCAAAGCTTATAGTTATAATTCAAATAAT
CGTGTAAGATTCAGTTGTCAGCACGGAGAGCGTGAATGTGATGGAAATGTATTTCAAGCG
TGTGTACTTGATTTTATTGGGGTAGAAAATCAAGACTCACAATTGAGTTTTGTTGCGTGT
GCAATGGACTTTTCTAAAAACCCTTTTAATTGTGCTCAAAATATGGGAATTGATCTGATT
AAAATAAATGAATGCACTAATGGAGAAAAAGGTATCCAATTACAAATTGATGCTGAGAAA
TATTCTACACCTCATATCAGACGATCTGGATTTGACTTTTGGGATTCTCTAGATGATTTT
GAAAGTGTTGTAACTCAAAAATTAGGAAACTTATGA

>g11191.t9 Gene=g11191 Length=191
MDVRNKILTLFAVVLLSTVNYICGQNYNDKLHIDIHYESRCPDSRNFIKNQLVPAYSKIK
DKVVLNYIPFGKAYSYNSNNRVRFSCQHGERECDGNVFQACVLDFIGVENQDSQLSFVAC
AMDFSKNPFNCAQNMGIDLIKINECTNGEKGIQLQIDAEKYSTPHIRRSGFDFWDSLDDF
ESVVTQKLGNL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g11191.t9 PANTHER PTHR13234:SF56 GH19763P 17 161 5.8E-37
3 g11191.t9 PANTHER PTHR13234 GAMMA-INTERFERON INDUCIBLE LYSOSOMAL THIOL REDUCTASE GILT 17 161 5.8E-37
1 g11191.t9 Pfam PF03227 Gamma interferon inducible lysosomal thiol reductase (GILT) 33 134 3.6E-30
6 g11191.t9 Phobius SIGNAL_PEPTIDE Signal peptide region 1 24 -
7 g11191.t9 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 7 -
8 g11191.t9 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 8 19 -
9 g11191.t9 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 20 24 -
5 g11191.t9 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 25 191 -
4 g11191.t9 SignalP_EUK SignalP-noTM SignalP-noTM 1 24 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values