General information for g11192.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative GILT-like protein 1.
Parent gene
- The parent gene g11192 is located on chr_1: 14506724..14507680 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11192 | g11192.t2 | isoform | g11192.t2 | 14498765 | 14507680 |
| chr_1 | g11192 | g11192.t2 | exon | g11192.t2.exon1 | 14498765 | 14498792 |
| chr_1 | g11192 | g11192.t2 | exon | g11192.t2.exon2 | 14506557 | 14507095 |
| chr_1 | g11192 | g11192.t2 | cds | g11192.t2.CDS1 | 14506724 | 14507095 |
| chr_1 | g11192 | g11192.t2 | exon | g11192.t2.exon3 | 14507297 | 14507350 |
| chr_1 | g11192 | g11192.t2 | cds | g11192.t2.CDS2 | 14507297 | 14507350 |
| chr_1 | g11192 | g11192.t2 | exon | g11192.t2.exon4 | 14507414 | 14507545 |
| chr_1 | g11192 | g11192.t2 | cds | g11192.t2.CDS3 | 14507414 | 14507545 |
| chr_1 | g11192 | g11192.t2 | exon | g11192.t2.exon5 | 14507618 | 14507680 |
| chr_1 | g11192 | g11192.t2 | cds | g11192.t2.CDS4 | 14507618 | 14507680 |
| chr_1 | g11192 | g11192.t2 | TSS | g11192.t2 | 14507753 | 14507753 |
| chr_1 | g11192 | g11192.t2 | TTS | g11192.t2 | NA | NA |
Sequences
>g11192.t2 Gene=g11192 Length=816
ATGAAGCTGTGGATTGCTTTTGTGCTTTTTACAATAAATATTTGCATAACATGCATGGTT
AAGGTAAAAATGGACATTTACTATGAGTCTCTCTGTCCCGATTCCATACGGTTCATAAAT
CAACAACTCTATCCACTTTATAATGAGTTTAAAGATAATTTAGATATAACTTTTATACCT
CATGGCAAAAGTAATAGTTACCAAGGAAATTCCGGAGAGATTGAATTTGAATGCCAACAT
GGACCAGACGAATGTTTTGGAAATAAGGTACAAGGTTGTATGCTTGCACGTATTCGAGAC
CAAGATACGCAAGTGTCTTATGTTGCATGCCAAATGCAATTTGGTGCTGATCGTACACAT
CAAGCGTGTGTTGAAGCTTTCGGTGTTTCATGGAATGAAATTTTGCAATGTGTTGGAGGA
GAGTTTGCAACAAAACAGCAGTTAGGATTCGAAAGAGTAACAACGCCAGTTTTAAGAACA
ACAAATTGGGTTCCTTCTATAGTTTACAATAATCAAATAACAGATTATACTCATTCAGGC
AATAGCCCACCACTAAAAGACGTTATTTGCTCGCTTATCTCAAACACCAATTCAGCGTGT
CTGGAAAAATATCACTTCTAAAATTTTGATAAAATGTTTTTAATCTTTTTTTATTTTTTT
TTTTTTTGATGATTGTTTAATTCCGTTTAATTAATAATACGTTTATTGACACACTTAACA
TTTGATAAAAAAAACAGTAGACAGTGATATTGAAAGTTTTTTTCGGAAAATAAAACAAAA
CTCTGAAGAAAATCAAAAAAGAAAGATAAAATTAAA
>g11192.t2 Gene=g11192 Length=206
MKLWIAFVLFTINICITCMVKVKMDIYYESLCPDSIRFINQQLYPLYNEFKDNLDITFIP
HGKSNSYQGNSGEIEFECQHGPDECFGNKVQGCMLARIRDQDTQVSYVACQMQFGADRTH
QACVEAFGVSWNEILQCVGGEFATKQQLGFERVTTPVLRTTNWVPSIVYNNQITDYTHSG
NSPPLKDVICSLISNTNSACLEKYHF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g11192.t2 | PANTHER | PTHR13234:SF56 | GH19763P | 16 | 196 | 5.4E-46 |
| 3 | g11192.t2 | PANTHER | PTHR13234 | GAMMA-INTERFERON INDUCIBLE LYSOSOMAL THIOL REDUCTASE GILT | 16 | 196 | 5.4E-46 |
| 1 | g11192.t2 | Pfam | PF03227 | Gamma interferon inducible lysosomal thiol reductase (GILT) | 24 | 125 | 1.1E-31 |
| 6 | g11192.t2 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 17 | - |
| 7 | g11192.t2 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 8 | g11192.t2 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 12 | - |
| 9 | g11192.t2 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 13 | 17 | - |
| 5 | g11192.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 18 | 206 | - |
| 4 | g11192.t2 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 17 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K08059 (interferon, gamma-inducible protein 30)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
