General information for g11192.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative GILT-like protein 1.
Parent gene
- The parent gene g11192 is located on chr_1: 14506724..14507680 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11192 | g11192.t3 | isoform | g11192.t3 | 14506525 | 14507680 |
| chr_1 | g11192 | g11192.t3 | exon | g11192.t3.exon1 | 14506525 | 14507095 |
| chr_1 | g11192 | g11192.t3 | TTS | g11192.t3 | 14506541 | 14506541 |
| chr_1 | g11192 | g11192.t3 | cds | g11192.t3.CDS1 | 14506724 | 14507095 |
| chr_1 | g11192 | g11192.t3 | exon | g11192.t3.exon2 | 14507297 | 14507680 |
| chr_1 | g11192 | g11192.t3 | cds | g11192.t3.CDS2 | 14507297 | 14507539 |
| chr_1 | g11192 | g11192.t3 | TSS | g11192.t3 | 14507753 | 14507753 |
Sequences
>g11192.t3 Gene=g11192 Length=955
ATGAAGCTGTGGATTGCTTTTGTGCTTTTTACAATAAATATTTGCATAACATGCATGGTT
AAGGTAAAGAATTGATTTTTATTAATTGTGGTTTGAACTGCATAATGACAGCTGTTGCAT
AATAAAAACTATCAGGTAAAAATGGACATTTACTATGAGTCTCTCTGTCCCGATTCCATA
CGGTTCATAAATCAACAACTCTATCCACTTTATAATGAGTTTAAAGATAATTTAGATATA
ACTTTTATACCTCATGGCAAAAGTAATGTAAGTCAAATCATTTTAAAATTAAATAATGAA
TTTTTGAATAAAAATCTTCCAACAATTAAGAGTTACCAAGGAAATTCCGGAGAGATTGAA
TTTGAATGCCAACATGGACCAGACGAATGTTTTGGAAATAAGGTACAAGGTTGTATGCTT
GCACGTATTCGAGACCAAGATACGCAAGTGTCTTATGTTGCATGCCAAATGCAATTTGGT
GCTGATCGTACACATCAAGCGTGTGTTGAAGCTTTCGGTGTTTCATGGAATGAAATTTTG
CAATGTGTTGGAGGAGAGTTTGCAACAAAACAGCAGTTAGGATTCGAAAGAGTAACAACG
CCAGTTTTAAGAACAACAAATTGGGTTCCTTCTATAGTTTACAATAATCAAATAACAGAT
TATACTCATTCAGGCAATAGCCCACCACTAAAAGACGTTATTTGCTCGCTTATCTCAAAC
ACCAATTCAGCGTGTCTGGAAAAATATCACTTCTAAAATTTTGATAAAATGTTTTTAATC
TTTTTTTATTTTTTTTTTTTTTGATGATTGTTTAATTCCGTTTAATTAATAATACGTTTA
TTGACACACTTAACATTTGATAAAAAAAACAGTAGACAGTGATATTGAAAGTTTTTTTCG
GAAAATAAAACAAAACTCTGAAGGTTATCATTGAGTTAGTTGAGATTACATGAAA
>g11192.t3 Gene=g11192 Length=204
MDIYYESLCPDSIRFINQQLYPLYNEFKDNLDITFIPHGKSNVSQIILKLNNEFLNKNLP
TIKSYQGNSGEIEFECQHGPDECFGNKVQGCMLARIRDQDTQVSYVACQMQFGADRTHQA
CVEAFGVSWNEILQCVGGEFATKQQLGFERVTTPVLRTTNWVPSIVYNNQITDYTHSGNS
PPLKDVICSLISNTNSACLEKYHF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g11192.t3 | PANTHER | PTHR13234:SF56 | GH19763P | 2 | 43 | 0 |
| 5 | g11192.t3 | PANTHER | PTHR13234 | GAMMA-INTERFERON INDUCIBLE LYSOSOMAL THIOL REDUCTASE GILT | 2 | 43 | 0 |
| 2 | g11192.t3 | PANTHER | PTHR13234:SF56 | GH19763P | 59 | 194 | 0 |
| 4 | g11192.t3 | PANTHER | PTHR13234 | GAMMA-INTERFERON INDUCIBLE LYSOSOMAL THIOL REDUCTASE GILT | 59 | 194 | 0 |
| 1 | g11192.t3 | Pfam | PF03227 | Gamma interferon inducible lysosomal thiol reductase (GILT) | 2 | 123 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed