Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Beta carbonic anhydrase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11197 g11197.t8 isoform g11197.t8 14515563 14516892
chr_1 g11197 g11197.t8 exon g11197.t8.exon1 14515563 14515770
chr_1 g11197 g11197.t8 exon g11197.t8.exon2 14515894 14516013
chr_1 g11197 g11197.t8 exon g11197.t8.exon3 14516087 14516249
chr_1 g11197 g11197.t8 cds g11197.t8.CDS1 14516105 14516249
chr_1 g11197 g11197.t8 exon g11197.t8.exon4 14516308 14516499
chr_1 g11197 g11197.t8 cds g11197.t8.CDS2 14516308 14516499
chr_1 g11197 g11197.t8 exon g11197.t8.exon5 14516579 14516892
chr_1 g11197 g11197.t8 cds g11197.t8.CDS3 14516579 14516892
chr_1 g11197 g11197.t8 TTS g11197.t8 14517081 14517081
chr_1 g11197 g11197.t8 TSS g11197.t8 NA NA

Sequences

>g11197.t8 Gene=g11197 Length=997
TTATGGTCTTATTCTTTCTTAATTTTAGGGCACGGTTTTAAAAATATTTTAAGATTATTG
TTTAGTGTTAGTGTAAGTGTATTTGCACAAAACAACAGGTTTTAAAAACAAATTGAGTAA
ATCATGAGTAATTAAAGGGATTTTACACTCCTGTGTATCATCACATAAATCTTTAGTTTA
TAGAAACTAACTTCAACTTAAATTTACGATTGTAAATAAGTAGCACAAGAAATGGAACGA
ATTTTAAGAGGAATTATGAGATATCGGAATACAACAAGAGCAGCGATGGTGAAAGAATTT
GAGCAAGTTAGAGATAATCCGCAACCAAGCAGTCTTCTTCACTTGTATGGATTCTCGAAT
GATACCAACAAGGTTTACTGACACACACGTTGGAGACATGTTTGTTGTAAGAAATGCTGG
CAATCTTGTACCTCATAGTCACTTTTTTCAAGATGAATATTTCTCATGCGAACCAGCTGC
TCTTGAATTAGGTTGTGTTGTGAATAATATTCGTCACGTTATTGTGTGTGGTCATAGTGA
CTGTAAAGCAATCAATCTTCTTCATCAACTTCAATGTACTCAGTTTGCATCAAGAAAGAA
TCGTAGACTCTCTCCTCTTCGAAGCTGGCTAGCAACGCATGCTTCTACAAGTCTTGAAAA
ATTCCAGTATCTTTCCGAGCATGGATTTGACAAACCATTAATGTTCACTGCCGAAACACC
ACTTCGAAAATTTGTTGCTTACATCGACCCAGATAATAAATTTGCAATTGAAGATAAATT
GTCACAGATTAATACATTACAACAGCTACAGAATATTGCCAGTTATGGTTTTCTTAAGAA
ACGTTTAGAGCAATTTGATTTGCACATTCATGCACTTTGGTTTGATATCTATACTGGTGA
TATTTATTATTTCAGTAGACAAATGAAGAGATTTGTAATCATATCAGAAGAAACAATCGA
TAAAATCAGTGAAGATGTAAAGAAATATTACTCATGA

>g11197.t8 Gene=g11197 Length=216
MDSRMIPTRFTDTHVGDMFVVRNAGNLVPHSHFFQDEYFSCEPAALELGCVVNNIRHVIV
CGHSDCKAINLLHQLQCTQFASRKNRRLSPLRSWLATHASTSLEKFQYLSEHGFDKPLMF
TAETPLRKFVAYIDPDNKFAIEDKLSQINTLQQLQNIASYGFLKKRLEQFDLHIHALWFD
IYTGDIYYFSRQMKRFVIISEETIDKISEDVKKYYS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g11197.t8 Gene3D G3DSA:3.40.1050.10 - 1 199 0
2 g11197.t8 PANTHER PTHR11002:SF69 CARBONIC ANHYDRASE 1 214 0
3 g11197.t8 PANTHER PTHR11002 CARBONIC ANHYDRASE 1 214 0
1 g11197.t8 Pfam PF00484 Carbonic anhydrase 1 185 0
5 g11197.t8 SMART SM00947 Pro_CA_2 1 190 0
4 g11197.t8 SUPERFAMILY SSF53056 beta-carbonic anhydrase, cab 1 212 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008270 zinc ion binding MF
GO:0004089 carbonate dehydratase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed