Gene loci information

Transcript annotation

  • This transcript has been annotated as Activating signal cointegrator 1 complex subunit 3.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11201 g11201.t1 TTS g11201.t1 14550194 14550194
chr_1 g11201 g11201.t1 isoform g11201.t1 14550273 14557145
chr_1 g11201 g11201.t1 exon g11201.t1.exon1 14550273 14550864
chr_1 g11201 g11201.t1 cds g11201.t1.CDS1 14550273 14550864
chr_1 g11201 g11201.t1 exon g11201.t1.exon2 14550920 14551255
chr_1 g11201 g11201.t1 cds g11201.t1.CDS2 14550920 14551255
chr_1 g11201 g11201.t1 exon g11201.t1.exon3 14551319 14551483
chr_1 g11201 g11201.t1 cds g11201.t1.CDS3 14551319 14551483
chr_1 g11201 g11201.t1 exon g11201.t1.exon4 14551545 14553365
chr_1 g11201 g11201.t1 cds g11201.t1.CDS4 14551545 14553365
chr_1 g11201 g11201.t1 exon g11201.t1.exon5 14553428 14555543
chr_1 g11201 g11201.t1 cds g11201.t1.CDS5 14553428 14555543
chr_1 g11201 g11201.t1 exon g11201.t1.exon6 14555626 14556980
chr_1 g11201 g11201.t1 cds g11201.t1.CDS6 14555626 14556980
chr_1 g11201 g11201.t1 exon g11201.t1.exon7 14557042 14557145
chr_1 g11201 g11201.t1 cds g11201.t1.CDS7 14557042 14557145
chr_1 g11201 g11201.t1 TSS g11201.t1 14557325 14557325

Sequences

>g11201.t1 Gene=g11201 Length=6489
ATGAGTTTAGCAAAATTATCTCGTTCTGCTCGTGCATCTACAGATTTGGATATTAAAAGA
AATTTTAAGAAAATTAAAAATCAGCAAGAACAATCACATGAAAAATCATCATGGCAAAAA
GCAAAAAAGTTCATATTGAATAATTGTGATCAGCAACTTAAAGGGACTATTGAGAAAAAG
CTTCATGAATTATGGACAAAAATCAAAGATACAACAAATGGTGAAGAATCTTCAGATTTA
ATTGATGATTTAACACTTTTTGTCTTTAGTATTTTTCTTAATCAAAAAAATGTTCTCACA
AAACATCAAGCTCAATTGAAGAAATTCTTTGGCGAAATTAATAGCAAACAGACTCATGAT
TTTCATTCACTTGTTGCTCAGATAGCTGAAAATTTGAGTGATCAAAACTTAGAGAAATTA
AAAGAAATTGTTGCTGACAATGACTCAAATTCAAATCAAAAACTTTTCGGATCTACAATC
AAATATACTGCACCAACAGAATACTTTCAAGATACATCTTTTCTAAATGAATTAATAACA
ACAACTCAAAGCTTTACAGCCAATGGAACAGTAAGTTCATTTTCTATGAAATTTGAAAAG
ACTGAACCAGAAACATCAAAGACACATGGAACGACATATGATAGAAATTGGATGTCAAAG
AATATCAACTCTGATTTAGTTGAACCATTAATTATTATTTTAAAGTCACAAAAGTCCAAT
GATGAATTACAAAATGAGCTATTTGAACTATTAGGGTTTGATAAATTTGAAATGATTCTT
GAAATCCTGGATAATCGGAAAGTACTATTGAAAAATTTAGATGCAAATGAAAAGAAAGAA
ATGGTAAAAGAGCATATTAATAAGAGACAAACTGAAGCACTTAAAAAACCTACACCAGCT
CCTGACTTTTTGATGCCTGTTCTTGTACAATCAGAGAAAGAAAAGGAATTAGTTAAACTA
GCTAGAAAAGACGAAAAAAAATTAAGAAACATGAAAGCTACTGGTGATGACGAAGATGAC
GAAGAAGCGCAATTGGCAGCATTACAATTCAATCAGACGAGTGCACTCTTGAAAATTGCT
CAGAAAGCTCCTCTCATGTCAGAAAATAATTCTTCAAGTATTTTCCAACGCTATTCTTTA
CAATCACAACCAAAGTATCCCAATGTTTATGATTCAACAAAAGATGCAAGAGCACACATT
GGATTTTTGTCTGGCAACAAAATTCTTTTACCTGAAGACACTGTTCGAAAAGACAGCAAG
ATGTATGAAGAAGTCACTATTCCTGCAAAAGAAGTACCGAGTAATTTGACAGTAGGCAAT
AATCGTGTTAAAATTGAATCTTTAGATGAAATCGGTCAAATTGTCTTTAAAGGCACTAAA
GAACTCAACCGAATTCAAACTATTGTTATTCCAACTGCATATCATTCCAATGAGAATCTT
TTAATTTGTGCTCCAACAGGTGCGGGTAAAACCAATATAGCTATGTTAACAATGATCAAT
GTTATTCGTGCACATACAGATCAAGGTGTTATACATAGAGAGCAATTTAAAATAGTATAT
GTTGCACCAATGAAAGCACTTGCTGCAGAAATGACTGAAAACTTTTCAAAACGATTAAAA
CCATTGGGTATTGCTGTAAGAGAATTGACTGGTGATATGCAATTAACAAAGACGGAAATG
CAAGCAACACAAATTCTAGTTACAACTCCAGAAAAGTGGGATGTTGTTACAAGAAAAGGC
GCTGGTGATGCTTCAATGATAAGCTTAGTAAAGCTTTTGATTATCGACGAAGTTCATTTA
TTGCATGGAGAACGTGGACCTGTAGTTGAGGCTTTAGTTGCTCGTACACTTCGTTTAGTT
GAATCTTCACAATCAATGATTCGCATTGTTGGATTGTCAGCAACACTTCCCAATTATATT
GATGTAGCTCGATTTCTTCGAGTAAATCCAGCTATTGGATTGTTCTTTTTCGATTCAAGA
TTTCGTCCTATTCCACTTTCACAACAATTCATTGGAATCAAATCACTTAAAGCACTTGAA
GTTTTAAATGATATGAATACAGTTTGTTATGAAAAGTGTTTGGAACAACTTAAAAATGGA
AAGCAAGTTATGGTATTTGTACATGCTAGAAATGCTACAACTCGAACTGCCATGAATTTA
CTTGAAATGGCTCAACAAAAAGGTCACACGCAAATATTTAGTTGCGAGAAAAGTTTTGAA
TTTTCTAATGCACTGAAAACTGTTAGCAAAAGTAGAAACAAACAATTGAAGGATCTTTTT
CAAGGTGGTTTTGGATTTCATCATGCTGGTATGCTTCGTCAGGATCGAACAATGGTTGAA
AAATTATTCTCTGATGGTCTCATCAAAGTACTTGTTTGTACTGCAACACTTGCATGGGGT
GTCAATTTGCCAGCACATGCTGTTATAATCAAAGGAACTGAAATTTACGATTCTAAACAT
GGTTCATTTGTTGATTTAGGAATATTAGATGTACTTCAAATATTTGGTCGAGCAGGAAGA
CCTCAATTTGATAAAAGTGGATTAGGTATTATTATAACGACACACGATAAATTAAATCAC
TACCTATCATTGCTAACAAATCAATTTCCGATCGAATCTAATTTTGTTCAATGTCTTGCC
GATAATCTTAATGCTGAAATCTCATTGGGTACAATTTCAAACATTCAAGAAGCTATTGAA
TGGCTGAGTTATACATATTTGTTTGTTCGCATGAGAATCAATCCTCAAGTATACGGTCTA
AATTATACAGACATTCAAGAAGACCCGACACTTGTAATGCAACGAAGAAAACTCATTCAT
GATGCTGCAATGGCACTCGATAAAGCAAAAATGATTCGGTATAATATTCGTACTGAAGAC
TTGAATATTACTGATTTAGGAAGAACAGCTAGTCATTTTTATATTAAATACGATACAGTT
GAAATTTTCAATGAAATGCTTCGGCCAATTATGAACGAAAGTGAAATTCTTAATATGATG
GCGAATGCACATGAATTCCAACAACTTAAAGTTCGTGATGATGAAATGGATGAATTGGAC
GACTTGAATCGAGAAGTTTGTGAAGTACCAGTGAAGGGTGGCAGTGAAAACTTACATGGT
AAAGTCAATATTCTTATGCAAACCTATCTTTCGCGAGGTTTTGTGAAATCATTTTCACTA
GTCAGTGATATGAGCTATATTAATCAAAATGCTGTTCGTATTGCTCGTGGATTGTTTCAA
ATAATTTTACGTAACAATAATGCAATATTAGCTGGACGTCTATTAACGATTTCAAAAATG
TTTGAGCGTCAAATGTGGGATTTTATGACTCCGCTACGACAATTTTCTTCTATTCCTTTT
GATGTTATTGAAAAAATTGAAAATCGTGGATTAAGTATTGAAGCTTTAAGAGAAATGACT
GCAAAAGAGATTAGTGATATGGTTAGAAATCATAAATATGGTGAAATGGTAAAACGATAT
GCACATGAATTTCCAATGCTTTCTATTGAAGCTAATCTTCAGCCTATTACAAGAACTGTT
TTACGTATTCGCATTTTTATCACTGCTGATTTCAAATGGAACGATCGAATACATGGAAAA
AATTCGGAATCTTTTTGGATTTGGATTGAAGATCCCGAAAATAACTATATTTATCATTCA
GAATATTTTCAAGTGACCAAGAAACAAGTAATTAACAACGAACAACAAGAACTGATAATG
ACAATTCCTTTAAAAGATCCTTTACCACCTCAGTACTACATTCGAGCAACTAGTGACTCA
TGGCTAAGTTCAAGTGTTTATGAAGCTCTTAGTTTTAAGCATCTTATTTTACCTGAAATG
CATCCACCTCACACCGAATTATTGCCTCTTCAACCGCTTCCAATAACTGTTTTAAAAGAG
CCATCATTTGAAGCCCTTTACAAGTTCACTCACTTTAATCCAATTCAAACACAAATCTTT
CATTGTCTCTATCATACTGATCATAATGTGTTGCTTGGAGCACCCACTGGCAGTGGAAAA
TCTATTGCAGCAGAAATTGCTATATTTCGCGTTTTTAAACAAAATCCAAAAGCAAAAGTA
ATCTATATTGCTCCACTTAAAGCTCTTGTAAAGGAACGAATTGACGATTGGAGTATACGC
TTTGGTGAAAAATTAGGAAAGATTGTAGTAGAATTGACTGGTGATGTGACACCTGATGCA
AATGCTATAAGAAATTCCCATGTAATTGTTACAACTCCAGAAAAATGGGATGGTATTTCA
AGAAGCTGGCAAACTCGTGAATATGTGCGTGATGTTTCATTAATTGTAATTGACGAAATT
CACTTACTTGGTGAAGATAGAGGACCAGTACTCGAAGTTATTGTTTCACGAACAAACTTT
ATTAGTTCTCATACAACAAGAAAAATTCGAATCATTGGTCTATCGACAGCACTTGCTAAT
GCAAAAGATTTAGCAAATTGGCTTGAGATTGGTGAAATGGGACTCTATAATTTTAAACCA
TCTGTTCGGCCCGTTCCGATGTCAGTGCATATTTCAGGCTTTCCTGGAAAGCATTATTGC
CCACGAATGGCAACAATGAATAGACCAGCATTTCAAGCTATCCGTCAATATTCACCATGT
ACACCAGCTCTAATTTTTGTTTCATCTCGTAGACAAACACGTTTAACTGCACTCGATTTG
ATTGCATTTCTCGCTGGTGAAGAAAATCCAAAACAATTTTTGCACATTCAAGAAGATGAA
ATGGACCAAATTTTGATGGGAATTAAAGACAATAATTTGAAGTTAACGCTTGCTTTTGGA
ATTGGTTTGCATCATGCTGGTTTACAAGAAAAAGATAGAAAAGTTTGTGAAGAATTGTTC
CTGAATAGAAAAATTCAAATTTTAATTGCAACGTCGACTCTTGCTTGGGGTGTCAATCTA
CCAGCACATTTAGTTATTATTAAAGGAACTGAATATTATGATAAGAAAACGAACAGATAT
GTTGATATGCCAATTACTGATGTTCTTCAAATGATGGGAAGAGCTGGACGACCACAGTAC
GATAATGAAGGAATTGCCTGCGTTTTTGTGCATGATGTAAAAAAGAATTTTTATAAAAAG
TTTCTTTATGATCCATTTCCTGTTGAATCAAGTTTATTGGCTGTGTTACCAGATCATATT
AATGCTGAGATAGTAGCAGGAACTGTTCAAACAAAACAAGGAATTTTAGACTATTTAACA
TGGACTTATTTCTTTAGACGACTATTGAAAAATCCTAGTTATTATAACATGGAAGCAACA
GATGATAAATCAGTTAATCGATTCTTATCAGAATTGATTCAAAATGTACTTGAAACTTTA
CAAGATGCTGGTTGTATTGAATTTGATGATGACAATCGAACTGTTTATTCTACTAGCATG
GGTCGTATTTCATCTTATTATTATTTGAGTCACATTACTATGAAACATTTTGCTAACACT
TTAGATTTTACATCAAGTGATGAAAATGTGTTGCGAATAATGTGTGATTCTTATGAATTT
GTAGAGCAACCGGTTAGACACAATGAAGAAAAATACAACGAAGAATTGGCAAAAATGTGT
CGTCTTAAATGTGATCCATTAACATACGACAATCCTCATACGAAGACATTCCTTCTTATG
CAAGCACATTTTTCACATCTTCCTTTACCAAATACTGATTTTGCAACTGATACTAAATCT
GTTTTGGATCAATCAATCCGTATTCTACAAGCTATGATTGATGTTGTTGCTGAAAATGGA
TGGTTAGCAACTACTTTAAAAATTCAATTGCTTATTCAAAGTGTCATTCAAGCTCGTTGG
CAAGATGATCCAGTTGTTCTCTGTTTGCCACATGTTGATGAACATAATCTCTATGTATTT
AATAACATAAAAATTGACTATCCAATATTAACTCTTCCATTACTAAAAGAAAAATGTTTA
AAAAATTATGAAGCGCTTGCTGGGCCATTGCGTAAAGAATTTGAAGAACCACAAATTGAA
CAAATCTATAAAGTGATAAAAGAACTGCCGACTGTTAATGTTGAACTGAAAATTTGTGGT
CCATTGAAAGATTGCATTGAAGTTGAACAATTAGTAAAGCAACCATTAGATCGAAATAGT
TGGATACAAATTCATGCTGATGAAGAGTATTCCGTAGCAATAAATTTACATCGTTTGGGT
GTGCGAAATTCAAATTATATTTACTGTCGTTTCCCTAAACCTAAAGATGAAGGATGGTTC
TTGACATTAGGACACCAAGAAAATGGAGAGCTTCTGGCATTAAAAAGAACATCGCCTAAA
ACAAATAGAAGTTCACATCATTTAATTTTCAATGCACCTTCAAGTTTAGGTCGTGTGATT
TATACAGTCTATATTGTTTCTGATGGGTATATTGGTTTTGATCAGCAATACAACATTCAA
TTAGAAGTTATAGAGCCATTAAAGGACAAGATGAGAATGTTTGCGGGTAATTACTCAAAG
GAAATTTAA

>g11201.t1 Gene=g11201 Length=2162
MSLAKLSRSARASTDLDIKRNFKKIKNQQEQSHEKSSWQKAKKFILNNCDQQLKGTIEKK
LHELWTKIKDTTNGEESSDLIDDLTLFVFSIFLNQKNVLTKHQAQLKKFFGEINSKQTHD
FHSLVAQIAENLSDQNLEKLKEIVADNDSNSNQKLFGSTIKYTAPTEYFQDTSFLNELIT
TTQSFTANGTVSSFSMKFEKTEPETSKTHGTTYDRNWMSKNINSDLVEPLIIILKSQKSN
DELQNELFELLGFDKFEMILEILDNRKVLLKNLDANEKKEMVKEHINKRQTEALKKPTPA
PDFLMPVLVQSEKEKELVKLARKDEKKLRNMKATGDDEDDEEAQLAALQFNQTSALLKIA
QKAPLMSENNSSSIFQRYSLQSQPKYPNVYDSTKDARAHIGFLSGNKILLPEDTVRKDSK
MYEEVTIPAKEVPSNLTVGNNRVKIESLDEIGQIVFKGTKELNRIQTIVIPTAYHSNENL
LICAPTGAGKTNIAMLTMINVIRAHTDQGVIHREQFKIVYVAPMKALAAEMTENFSKRLK
PLGIAVRELTGDMQLTKTEMQATQILVTTPEKWDVVTRKGAGDASMISLVKLLIIDEVHL
LHGERGPVVEALVARTLRLVESSQSMIRIVGLSATLPNYIDVARFLRVNPAIGLFFFDSR
FRPIPLSQQFIGIKSLKALEVLNDMNTVCYEKCLEQLKNGKQVMVFVHARNATTRTAMNL
LEMAQQKGHTQIFSCEKSFEFSNALKTVSKSRNKQLKDLFQGGFGFHHAGMLRQDRTMVE
KLFSDGLIKVLVCTATLAWGVNLPAHAVIIKGTEIYDSKHGSFVDLGILDVLQIFGRAGR
PQFDKSGLGIIITTHDKLNHYLSLLTNQFPIESNFVQCLADNLNAEISLGTISNIQEAIE
WLSYTYLFVRMRINPQVYGLNYTDIQEDPTLVMQRRKLIHDAAMALDKAKMIRYNIRTED
LNITDLGRTASHFYIKYDTVEIFNEMLRPIMNESEILNMMANAHEFQQLKVRDDEMDELD
DLNREVCEVPVKGGSENLHGKVNILMQTYLSRGFVKSFSLVSDMSYINQNAVRIARGLFQ
IILRNNNAILAGRLLTISKMFERQMWDFMTPLRQFSSIPFDVIEKIENRGLSIEALREMT
AKEISDMVRNHKYGEMVKRYAHEFPMLSIEANLQPITRTVLRIRIFITADFKWNDRIHGK
NSESFWIWIEDPENNYIYHSEYFQVTKKQVINNEQQELIMTIPLKDPLPPQYYIRATSDS
WLSSSVYEALSFKHLILPEMHPPHTELLPLQPLPITVLKEPSFEALYKFTHFNPIQTQIF
HCLYHTDHNVLLGAPTGSGKSIAAEIAIFRVFKQNPKAKVIYIAPLKALVKERIDDWSIR
FGEKLGKIVVELTGDVTPDANAIRNSHVIVTTPEKWDGISRSWQTREYVRDVSLIVIDEI
HLLGEDRGPVLEVIVSRTNFISSHTTRKIRIIGLSTALANAKDLANWLEIGEMGLYNFKP
SVRPVPMSVHISGFPGKHYCPRMATMNRPAFQAIRQYSPCTPALIFVSSRRQTRLTALDL
IAFLAGEENPKQFLHIQEDEMDQILMGIKDNNLKLTLAFGIGLHHAGLQEKDRKVCEELF
LNRKIQILIATSTLAWGVNLPAHLVIIKGTEYYDKKTNRYVDMPITDVLQMMGRAGRPQY
DNEGIACVFVHDVKKNFYKKFLYDPFPVESSLLAVLPDHINAEIVAGTVQTKQGILDYLT
WTYFFRRLLKNPSYYNMEATDDKSVNRFLSELIQNVLETLQDAGCIEFDDDNRTVYSTSM
GRISSYYYLSHITMKHFANTLDFTSSDENVLRIMCDSYEFVEQPVRHNEEKYNEELAKMC
RLKCDPLTYDNPHTKTFLLMQAHFSHLPLPNTDFATDTKSVLDQSIRILQAMIDVVAENG
WLATTLKIQLLIQSVIQARWQDDPVVLCLPHVDEHNLYVFNNIKIDYPILTLPLLKEKCL
KNYEALAGPLRKEFEEPQIEQIYKVIKELPTVNVELKICGPLKDCIEVEQLVKQPLDRNS
WIQIHADEEYSVAINLHRLGVRNSNYIYCRFPKPKDEGWFLTLGHQENGELLALKRTSPK
TNRSSHHLIFNAPSSLGRVIYTVYIVSDGYIGFDQQYNIQLEVIEPLKDKMRMFAGNYSK
EI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
30 g11201.t1 CDD cd18020 DEXHc_ASCC3_1 461 658 0.0000000
32 g11201.t1 CDD cd18795 SF2_C_Ski2 662 854 0.0000000
33 g11201.t1 CDD cd18022 DEXHc_ASCC3_2 1311 1499 0.0000000
31 g11201.t1 CDD cd18795 SF2_C_Ski2 1503 1691 0.0000000
21 g11201.t1 Gene3D G3DSA:3.40.50.300 - 454 662 0.0000000
19 g11201.t1 Gene3D G3DSA:3.40.50.300 - 663 865 0.0000000
25 g11201.t1 Gene3D G3DSA:1.10.10.2530 - 872 963 0.0000000
22 g11201.t1 Gene3D G3DSA:1.10.3380.10 - 964 1106 0.0000000
26 g11201.t1 Gene3D G3DSA:1.10.150.20 5’ to 3’ exonuclease 1108 1162 0.0000000
28 g11201.t1 Gene3D G3DSA:2.60.40.150 - 1164 1275 0.0000000
20 g11201.t1 Gene3D G3DSA:3.40.50.300 - 1276 1503 0.0000000
18 g11201.t1 Gene3D G3DSA:3.40.50.300 - 1505 1709 0.0000000
24 g11201.t1 Gene3D G3DSA:1.10.10.2530 - 1710 1803 0.0000000
23 g11201.t1 Gene3D G3DSA:1.10.3380.10 - 1804 1941 0.0000000
27 g11201.t1 Gene3D G3DSA:2.60.40.150 - 2032 2151 0.0000000
7 g11201.t1 PANTHER PTHR24075 SEC63 DOMAIN-CONTAINING 457 2142 0.0000000
8 g11201.t1 PANTHER PTHR24075:SF6 ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3 457 2142 0.0000000
29 g11201.t1 PIRSF PIRSF039073 BRR2 3 2152 0.0000000
2 g11201.t1 Pfam PF00270 DEAD/DEAH box helicase 464 639 0.0000000
4 g11201.t1 Pfam PF00271 Helicase conserved C-terminal domain 736 840 0.0000035
6 g11201.t1 Pfam PF02889 Sec63 Brl domain 964 1265 0.0000000
1 g11201.t1 Pfam PF00270 DEAD/DEAH box helicase 1314 1479 0.0000000
3 g11201.t1 Pfam PF00271 Helicase conserved C-terminal domain 1596 1677 0.0000006
5 g11201.t1 Pfam PF02889 Sec63 Brl domain 1797 2140 0.0000000
45 g11201.t1 ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 471 654 23.1590000
42 g11201.t1 ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile. 689 903 10.7780000
44 g11201.t1 ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1321 1496 20.6570000
43 g11201.t1 ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile. 1533 1724 11.4100000
41 g11201.t1 SMART SM00487 ultradead3 458 669 0.0000000
35 g11201.t1 SMART SM00382 AAA_5 476 658 0.0110000
37 g11201.t1 SMART SM00490 helicmild6 754 842 0.0000000
39 g11201.t1 SMART SM00973 Sec63_2 963 1272 0.0000000
40 g11201.t1 SMART SM00487 ultradead3 1308 1508 0.0000000
34 g11201.t1 SMART SM00382 AAA_5 1326 1476 0.2900000
36 g11201.t1 SMART SM00490 helicmild6 1582 1679 0.0000000
38 g11201.t1 SMART SM00973 Sec63_2 1797 2141 0.0000000
16 g11201.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 372 647 0.0000000
14 g11201.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 657 870 0.0000000
10 g11201.t1 SUPERFAMILY SSF46785 Winged helix DNA-binding domain 870 975 0.0000000
13 g11201.t1 SUPERFAMILY SSF158702 Sec63 N-terminal domain-like 991 1165 0.0000000
17 g11201.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1194 1489 0.0000000
15 g11201.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1498 1707 0.0000000
9 g11201.t1 SUPERFAMILY SSF46785 Winged helix DNA-binding domain 1707 1809 0.0000000
12 g11201.t1 SUPERFAMILY SSF158702 Sec63 N-terminal domain-like 1827 2010 0.0000000
11 g11201.t1 SUPERFAMILY SSF81296 E set domains 2034 2145 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0003676 nucleic acid binding MF

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values