General information for g11201.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11201 is located on chr_1: 14556106..14557145 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11201 | g11201.t6 | isoform | g11201.t6 | 14556106 | 14557145 |
| chr_1 | g11201 | g11201.t6 | exon | g11201.t6.exon1 | 14556106 | 14556980 |
| chr_1 | g11201 | g11201.t6 | cds | g11201.t6.CDS1 | 14556107 | 14556980 |
| chr_1 | g11201 | g11201.t6 | TTS | g11201.t6 | 14556112 | 14556112 |
| chr_1 | g11201 | g11201.t6 | exon | g11201.t6.exon2 | 14557042 | 14557145 |
| chr_1 | g11201 | g11201.t6 | cds | g11201.t6.CDS2 | 14557042 | 14557145 |
| chr_1 | g11201 | g11201.t6 | TSS | g11201.t6 | 14557325 | 14557325 |
Sequences
>g11201.t6 Gene=g11201 Length=979
ATGAGTTTAGCAAAATTATCTCGTTCTGCTCGTGCATCTACAGATTTGGATATTAAAAGA
AATTTTAAGAAAATTAAAAATCAGCAAGAACAATCACATGAAAAATCATCATGGCAAAAA
GCAAAAAAGTTCATATTGAATAATTGTGATCAGCAACTTAAAGGGACTATTGAGAAAAAG
CTTCATGAATTATGGACAAAAATCAAAGATACAACAAATGGTGAAGAATCTTCAGATTTA
ATTGATGATTTAACACTTTTTGTCTTTAGTATTTTTCTTAATCAAAAAAATGTTCTCACA
AAACATCAAGCTCAATTGAAGAAATTCTTTGGCGAAATTAATAGCAAACAGACTCATGAT
TTTCATTCACTTGTTGCTCAGATAGCTGAAAATTTGAGTGATCAAAACTTAGAGAAATTA
AAAGAAATTGTTGCTGACAATGACTCAAATTCAAATCAAAAACTTTTCGGATCTACAATC
AAATATACTGCACCAACAGAATACTTTCAAGATACATCTTTTCTAAATGAATTAATAACA
ACAACTCAAAGCTTTACAGCCAATGGAACAGTAAGTTCATTTTCTATGAAATTTGAAAAG
ACTGAACCAGAAACATCAAAGACACATGGAACGACATATGATAGAAATTGGATGTCAAAG
AATATCAACTCTGATTTAGTTGAACCATTAATTATTATTTTAAAGTCACAAAAGTCCAAT
GATGAATTACAAAATGAGCTATTTGAACTATTAGGGTTTGATAAATTTGAAATGATTCTT
GAAATCCTGGATAATCGGAAAGTACTATTGAAAAATTTAGATGCAAATGAAAAGAAAGAA
ATGGTAAAAGAGCATATTAATAAGAGACAAACTGAAGCACTTAAAAAACCTACACCAGCT
CCTGACTTTTTGATGCCTGTTCTTGTACAATCAGAGAAAGAAAAGGAATTAGTTAAACTA
GCTAGAAAAGACGAAAAAA
>g11201.t6 Gene=g11201 Length=326
MSLAKLSRSARASTDLDIKRNFKKIKNQQEQSHEKSSWQKAKKFILNNCDQQLKGTIEKK
LHELWTKIKDTTNGEESSDLIDDLTLFVFSIFLNQKNVLTKHQAQLKKFFGEINSKQTHD
FHSLVAQIAENLSDQNLEKLKEIVADNDSNSNQKLFGSTIKYTAPTEYFQDTSFLNELIT
TTQSFTANGTVSSFSMKFEKTEPETSKTHGTTYDRNWMSKNINSDLVEPLIIILKSQKSN
DELQNELFELLGFDKFEMILEILDNRKVLLKNLDANEKKEMVKEHINKRQTEALKKPTPA
PDFLMPVLVQSEKEKELVKLARKDEK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g11201.t6 | Pfam | PF18149 | N-terminal helicase PWI domain | 226 | 271 | 4.4e-05 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed