General information for g11204.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Phosphatidylserine decarboxylase proenzyme, mitochondrial.
Parent gene
- The parent gene g11204 is located on chr_1: 14563947..14565367 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11204 | g11204.t1 | TTS | g11204.t1 | 14561294 | 14561294 |
| chr_1 | g11204 | g11204.t1 | isoform | g11204.t1 | 14561349 | 14565367 |
| chr_1 | g11204 | g11204.t1 | exon | g11204.t1.exon1 | 14561349 | 14561445 |
| chr_1 | g11204 | g11204.t1 | cds | g11204.t1.CDS1 | 14561349 | 14561445 |
| chr_1 | g11204 | g11204.t1 | exon | g11204.t1.exon2 | 14561510 | 14561720 |
| chr_1 | g11204 | g11204.t1 | cds | g11204.t1.CDS2 | 14561510 | 14561720 |
| chr_1 | g11204 | g11204.t1 | exon | g11204.t1.exon3 | 14563092 | 14563561 |
| chr_1 | g11204 | g11204.t1 | cds | g11204.t1.CDS3 | 14563092 | 14563561 |
| chr_1 | g11204 | g11204.t1 | exon | g11204.t1.exon4 | 14563949 | 14564106 |
| chr_1 | g11204 | g11204.t1 | cds | g11204.t1.CDS4 | 14563949 | 14564106 |
| chr_1 | g11204 | g11204.t1 | exon | g11204.t1.exon5 | 14564189 | 14564325 |
| chr_1 | g11204 | g11204.t1 | cds | g11204.t1.CDS5 | 14564189 | 14564325 |
| chr_1 | g11204 | g11204.t1 | exon | g11204.t1.exon6 | 14564419 | 14564564 |
| chr_1 | g11204 | g11204.t1 | cds | g11204.t1.CDS6 | 14564419 | 14564564 |
| chr_1 | g11204 | g11204.t1 | exon | g11204.t1.exon7 | 14565336 | 14565367 |
| chr_1 | g11204 | g11204.t1 | cds | g11204.t1.CDS7 | 14565336 | 14565367 |
| chr_1 | g11204 | g11204.t1 | TSS | g11204.t1 | 14565619 | 14565619 |
Sequences
>g11204.t1 Gene=g11204 Length=1251
ATGGCGGTATATTTCATTCCCAAAACAAAATTGATCTCAAGAGCGACAAACAATTTTCGA
CCAAAACAGTGGACGTCGAAATGGACGATAATTAGAAGGCCGTTTTCACAGTCACAACAA
CAATATCACCAACAGAATAGCAATAGTACAAATGCTAAAAATCAAAATACCCGCAAAGGA
GGATGGCTATCATGGCAAGGCGCAATCTTGCGTTGGACTCCGTTGGGTATATGTATAATC
GCTGCTGCACATTGGCATCTGCATAAACGTGAATGCGAAAGAAGAGGTCTTCCAAAAACA
GCCACTGCATGGCAGACAAATGTATATTGTTCGCTTCCGTTGAGACTCATGAGTAGATGT
TGGGGTTGGCTTGCAGACCGAGAAGTGCCTGAAATTCTTCGACCGTCCATATTTGGAATT
TATTCGTCATCATTTGGTGTTAATCTTGAAGAGGCTGTTGTATCAGATTTAAAATATTAT
CGAAGTCTGTCAGAATTTTTTACCCGATCAATTAAAGAAGAATGCCGGACAATAGCATCA
GACTGTGTTGTTTCGCCATGTGACGGCCGTGTACTTCATTGCGGAATCGTTACTAACGAA
ACACATTTAGAACAAGTCAAAGGTGTTACATATAGTCTGGAATCATTTCTTGGACCAAAA
TGGAAAAAAGACACATCTTCATCTGCATCATATATTGAAAATTTGAAGCAAAATCAAGAA
GGAACAAATTTATATCATTGTGTGATATATCTTGCACCTGGTGATTATCATAGATTTCAT
TCGCCCACGTCTTGGAAACCCAATATTCGACGTCATTTTCATGGTGAACTTTTATCAGTG
AATCCAAAAATTGCAAATTTAGTACCTGGACTTTTTTGCATTAATGAACGAGCAGCTTAC
ATAGGCGAATGGGAACATGGATTTTTCAGTTTCACAGCTGTTGGTGCAACAAACGTTGGT
TCAGTACAAGTTTTTATCGATCAAGATTTAAAGACAAATCGTTGGCGTGGACTTAAAGTT
GGGACGATGCGTGAAAAAGATTTCGATGAGCTGGCGATGAATAATGATATATTTCTCAAT
AAAGGTGAATTATTGGGTCAATTCAATATGGGTAGTACAATCGTTCTAGTTTTTGAGGCA
CCAAGTTCATTTAGATTTAATTTGTCACCAAATCAAGGAGTGAAAGTTGGTCAGAGTCTC
GGATGTATTTATGACAACGATAATGACAGTGGAATGGAAAGTGAAGAATGA
>g11204.t1 Gene=g11204 Length=416
MAVYFIPKTKLISRATNNFRPKQWTSKWTIIRRPFSQSQQQYHQQNSNSTNAKNQNTRKG
GWLSWQGAILRWTPLGICIIAAAHWHLHKRECERRGLPKTATAWQTNVYCSLPLRLMSRC
WGWLADREVPEILRPSIFGIYSSSFGVNLEEAVVSDLKYYRSLSEFFTRSIKEECRTIAS
DCVVSPCDGRVLHCGIVTNETHLEQVKGVTYSLESFLGPKWKKDTSSSASYIENLKQNQE
GTNLYHCVIYLAPGDYHRFHSPTSWKPNIRRHFHGELLSVNPKIANLVPGLFCINERAAY
IGEWEHGFFSFTAVGATNVGSVQVFIDQDLKTNRWRGLKVGTMREKDFDELAMNNDIFLN
KGELLGQFNMGSTIVLVFEAPSSFRFNLSPNQGVKVGQSLGCIYDNDNDSGMESEE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g11204.t1 | Hamap | MF_03208 | Phosphatidylserine decarboxylase proenzyme [PISD]. | 9 | 403 | 28.96195 |
| 2 | g11204.t1 | PANTHER | PTHR10067:SF6 | PHOSPHATIDYLSERINE DECARBOXYLASE PROENZYME, MITOCHONDRIAL | 25 | 405 | 0.00000 |
| 3 | g11204.t1 | PANTHER | PTHR10067 | PHOSPHATIDYLSERINE DECARBOXYLASE | 25 | 405 | 0.00000 |
| 1 | g11204.t1 | Pfam | PF02666 | Phosphatidylserine decarboxylase | 163 | 401 | 0.00000 |
| 5 | g11204.t1 | TIGRFAM | TIGR00163 | PS_decarb: phosphatidylserine decarboxylase | 152 | 402 | 0.00000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008654 | phospholipid biosynthetic process | BP |
| GO:0005739 | mitochondrion | CC |
| GO:0004609 | phosphatidylserine decarboxylase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K01613 (phosphatidylserine decarboxylase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
