General information for g1122.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Aspartate–tRNA ligase, cytoplasmic.
Parent gene
- The parent gene g1122 is located on chr_3: 8323149..8330315 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1122 | g1122.t8 | isoform | g1122.t8 | 8321821 | 8322526 |
| chr_3 | g1122 | g1122.t8 | exon | g1122.t8.exon1 | 8321821 | 8321830 |
| chr_3 | g1122 | g1122.t8 | cds | g1122.t8.CDS1 | 8321821 | 8321830 |
| chr_3 | g1122 | g1122.t8 | exon | g1122.t8.exon2 | 8321892 | 8322217 |
| chr_3 | g1122 | g1122.t8 | cds | g1122.t8.CDS2 | 8321892 | 8322217 |
| chr_3 | g1122 | g1122.t8 | exon | g1122.t8.exon3 | 8322282 | 8322526 |
| chr_3 | g1122 | g1122.t8 | cds | g1122.t8.CDS3 | 8322282 | 8322374 |
| chr_3 | g1122 | g1122.t8 | TSS | g1122.t8 | 8322807 | 8322807 |
| chr_3 | g1122 | g1122.t8 | TTS | g1122.t8 | NA | NA |
Sequences
>g1122.t8 Gene=g1122 Length=581
TGTAAGTTATTAATAATTACATTTTCCGAATGTCCTAATAGATGATGCAATCGAAGAATT
TTTTTGGTTATTGAGTGTTTGTCTTATCTTTTAATTGTTTTATGATTTAAATAATCTACT
TATTTTCGTTTCTTATCACTAATTTGATAGCTATGGTAACAGAAGAATCAACAATAAACA
ACAATGAAGGCCAGTCAAAAAATGCAGCAAAAAAGCTAGCCGCAAAAGCAGAAAAGGCAG
CAAAGCGTGCCGAAAAAACTGCAGCAGAAAAGAAACAAAAAGAGAATGTTGAAGAAGCAG
TTGGTGAAGATTATTCAAAAGATAAATATGGACAGTCTAAATTGATTCAATCAGGAGAAA
AGCATCTGGAACGAAATTTCGTACCTGTAGATCAATTAAGTAAAGCAGCAGAAAAAGGCT
CAAAAACTGTGTGGGTTCGCGGACGTATACATACATCTCGATGTAAAGGAAAACAATGTT
TTATCGTATTACGTCAGCAATCAAGTACTGTGCAAGTGCTTATTTCTGTTAATGACGTCA
TTTCGAAGCAAATGGTTAAATTCTCTGGATCAATTGCCCGT
>g1122.t8 Gene=g1122 Length=143
MVTEESTINNNEGQSKNAAKKLAAKAEKAAKRAEKTAAEKKQKENVEEAVGEDYSKDKYG
QSKLIQSGEKHLERNFVPVDQLSKAAEKGSKTVWVRGRIHTSRCKGKQCFIVLRQQSSTV
QVLISVNDVISKQMVKFSGSIAR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g1122.t8 | Coils | Coil | Coil | 16 | 46 | - |
| 7 | g1122.t8 | Gene3D | G3DSA:2.40.50.140 | - | 51 | 143 | 2.2E-23 |
| 5 | g1122.t8 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - |
| 6 | g1122.t8 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - |
| 4 | g1122.t8 | MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 53 | - |
| 1 | g1122.t8 | PANTHER | PTHR43450:SF1 | ASPARTATE–TRNA LIGASE, CYTOPLASMIC | 7 | 142 | 2.4E-22 |
| 2 | g1122.t8 | PANTHER | PTHR43450 | ASPARTYL-TRNA SYNTHETASE | 7 | 142 | 2.4E-22 |
| 3 | g1122.t8 | SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 56 | 141 | 9.55E-16 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006422 | aspartyl-tRNA aminoacylation | BP |
| GO:0005524 | ATP binding | MF |
| GO:0000166 | nucleotide binding | MF |
| GO:0004815 | aspartate-tRNA ligase activity | MF |
| GO:0005737 | cytoplasm | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
