Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Monocarboxylate transporter 10.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11233 g11233.t2 TTS g11233.t2 14834674 14834674
chr_1 g11233 g11233.t2 isoform g11233.t2 14834832 14836064
chr_1 g11233 g11233.t2 exon g11233.t2.exon1 14834832 14834839
chr_1 g11233 g11233.t2 cds g11233.t2.CDS1 14834832 14834839
chr_1 g11233 g11233.t2 exon g11233.t2.exon2 14835403 14835450
chr_1 g11233 g11233.t2 cds g11233.t2.CDS2 14835403 14835450
chr_1 g11233 g11233.t2 exon g11233.t2.exon3 14835504 14836064
chr_1 g11233 g11233.t2 cds g11233.t2.CDS3 14835504 14835999
chr_1 g11233 g11233.t2 TSS g11233.t2 NA NA

Sequences

>g11233.t2 Gene=g11233 Length=617
CTTATGTTCATATTGGAAAATTCATAGAAGAAAAATTTCCTGATGAAAATAAAAATTTGC
CACTTATGTGTATTGGAATAACTTCAGGCTTAGGTCGTATAATTTTTGGATGGATCTCAG
ACTTGCCAAATGTCAATCGTATATTTCTTCAACAAATTTCATTCTATTTTATTGGTCTCA
TGACAATATTTGTTCCACTTACTGACAATTATATATTTTTATTGTTTATTGTCCTTGCCC
TCGGATTATTTGATGGTTGCTTTATCTCATTACTTGGTCCTATTGCTTATGAGTTATGTG
GCAGTCATGGAGCAGCGCAAGCAATTGGATTTTTACTTGGGTTATGTTCTTTTGGATTAA
CTGCAGGTCCACCAATAGCAGGAGAAATATACGATAGTACAAAATCATATACCCTGCCAT
TTATACTTGCTGGCATTCCCCCGTTGGTCGGAGCTTCACTTATGTTCATTATTAGAGCTC
TAAAGGATGAGCGCAAAATTTCTAATGATGTTATTGAAGCTCAACCTCTTCAGACAATGC
CACAAATTGCTTGGGATAAAGAAAATAAACAACCAATTGAAGAACGTAGAGCAACTCTAG
CAGAACCAGATGAATAA

>g11233.t2 Gene=g11233 Length=183
MCIGITSGLGRIIFGWISDLPNVNRIFLQQISFYFIGLMTIFVPLTDNYIFLLFIVLALG
LFDGCFISLLGPIAYELCGSHGAAQAIGFLLGLCSFGLTAGPPIAGEIYDSTKSYTLPFI
LAGIPPLVGASLMFIIRALKDERKISNDVIEAQPLQTMPQIAWDKENKQPIEERRATLAE
PDE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g11233.t2 Gene3D G3DSA:1.20.1250.20 MFS general substrate transporter like domains 1 148 7.0E-15
20 g11233.t2 MobiDBLite mobidb-lite consensus disorder prediction 164 183 -
19 g11233.t2 MobiDBLite mobidb-lite consensus disorder prediction 166 183 -
2 g11233.t2 PANTHER PTHR11360:SF119 MONOCARBOXYLATE TRANSPORTER 10 1 146 6.3E-44
3 g11233.t2 PANTHER PTHR11360 MONOCARBOXYLATE TRANSPORTER 1 146 6.3E-44
1 g11233.t2 Pfam PF07690 Major Facilitator Superfamily 4 143 9.8E-12
8 g11233.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 25 -
13 g11233.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 26 43 -
9 g11233.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 44 48 -
12 g11233.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 49 75 -
7 g11233.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 76 86 -
14 g11233.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 87 105 -
10 g11233.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 106 116 -
11 g11233.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 117 136 -
6 g11233.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 137 183 -
21 g11233.t2 ProSiteProfiles PS50850 Major facilitator superfamily (MFS) profile. 1 183 8.676
4 g11233.t2 SUPERFAMILY SSF103473 MFS general substrate transporter 2 142 5.36E-19
18 g11233.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 21 43 -
16 g11233.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 48 70 -
17 g11233.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 77 99 -
15 g11233.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 114 136 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055085 transmembrane transport BP
GO:0015349 thyroid hormone transmembrane transporter activity MF
GO:0005887 integral component of plasma membrane CC
GO:0015173 aromatic amino acid transmembrane transporter activity MF
GO:0022857 transmembrane transporter activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values