General information for g11244.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Facilitated trehalose transporter Tret1.
Parent gene
- The parent gene g11244 is located on chr_1: 14873227..14874756 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11244 | g11244.t1 | TSS | g11244.t1 | 14873220 | 14873220 |
| chr_1 | g11244 | g11244.t1 | isoform | g11244.t1 | 14873227 | 14874756 |
| chr_1 | g11244 | g11244.t1 | exon | g11244.t1.exon1 | 14873227 | 14873257 |
| chr_1 | g11244 | g11244.t1 | cds | g11244.t1.CDS1 | 14873227 | 14873257 |
| chr_1 | g11244 | g11244.t1 | exon | g11244.t1.exon2 | 14873317 | 14873585 |
| chr_1 | g11244 | g11244.t1 | cds | g11244.t1.CDS2 | 14873317 | 14873585 |
| chr_1 | g11244 | g11244.t1 | exon | g11244.t1.exon3 | 14873652 | 14874431 |
| chr_1 | g11244 | g11244.t1 | cds | g11244.t1.CDS3 | 14873652 | 14874431 |
| chr_1 | g11244 | g11244.t1 | exon | g11244.t1.exon4 | 14874496 | 14874756 |
| chr_1 | g11244 | g11244.t1 | cds | g11244.t1.CDS4 | 14874496 | 14874756 |
| chr_1 | g11244 | g11244.t1 | TTS | g11244.t1 | 14874794 | 14874794 |
Sequences
>g11244.t1 Gene=g11244 Length=1341
ATGTGGTCGTTGGTGAGAACAACCATTGTTGCGAATATTGGTTCATTTTTCTTTGGAGTT
TCATTAGTATGGTCATCAATAATTGGTGTGCAAATTGTCGAAAATGAAAAATATAAATTT
TGGATAACGAAAACTCAATTTGGGATTGTTGTGAGTGCATTATCATTTGGTGCAGCATGC
TCATGTATTATCTCAGGAGTCGTTCGACATAGTTTCGGTACAAGATTCACAATATTCATA
TTTAGCTCCTTTGCAACTATTGGTTCCATTTTAATAACCGTTCCACAAAATTTATTAATG
TTGATAGTGGGACGATTTCTATTAGGATTAGCTATAGGCTCTTATAGCTTCGTTATTCCA
ATTTACATAGGCGAAATTAGCTCTAGTGAATTAAGAGGAATTATGTTGAGCTATTTTCAG
ATAATGTTAAACTTAGGAATACTCCTCGCTTATATACTCGGATATTTTGTAAATGTGAAC
AATTTCAACATCGTTTGTGGATCTATTCCTCTGTTTTACTCAATTGCGTTTCTTGCATTG
CCTGAATCACCAGTTTTTCTAGTCAGTAAGGGAAAATATGACAAAACACATTTGACAATG
CAACTTTTAAGAGGAAGAGAGCAAAATTTTCAACCTGAAATTGCTTCAATGAAAGAAGAG
CAGACAAAGATTGAAAAAACTAGCTTTAGTGAGCTTATGAAAGTCAAGTGTGTGAAAAAA
GCTTTAATAATCATCATGTTTCAGTTCTTTTGTTTCCAATTGAGCGGAGCTAACGCAGTA
ACTTTTTATGCACAACAGATTTTCAATGATGCTGCTATGAATATAGAATCGAGTATAGCA
GCTATAATAGTAACGACTTTTCAATTCATCACTTCAGTAATTGCAGTCCGATACATTAAT
CTTTATGGACGTAAAAAGATGATTTGTACATTCAACTTATTTTTGGTTTTATCATTAATG
TCATTGGGCATTTATTTCATACTGAAAGACAATAATTATTTCTTAATAAGGAGTTTAAGT
TGGCTGCCATTGTTATCAATGTGCGTTTATCTCGTTACATTTTGTCTTGGAATGGGTCCC
GTCACTTACATATGGCTCGGTGAGCTCTTCATACAAAATAATGCGAAAAAAACGATCGCA
CCTCTGGGACAGATGATAAATCATACGCTTACATTTCTTATCGGACTATTCTTTCCACTC
TTGACTAATCTAATTGGCAGTGGATTTATCTTTTTTTCCTTTGCCGTCGTAACTGTGATT
GACATTATTTTCATTATTCTTTTCGTTCCTGAAACAAATGGGAAAACTTCTGAAGAAATT
CAAAATGCATTGTCAAGATGA
>g11244.t1 Gene=g11244 Length=446
MWSLVRTTIVANIGSFFFGVSLVWSSIIGVQIVENEKYKFWITKTQFGIVVSALSFGAAC
SCIISGVVRHSFGTRFTIFIFSSFATIGSILITVPQNLLMLIVGRFLLGLAIGSYSFVIP
IYIGEISSSELRGIMLSYFQIMLNLGILLAYILGYFVNVNNFNIVCGSIPLFYSIAFLAL
PESPVFLVSKGKYDKTHLTMQLLRGREQNFQPEIASMKEEQTKIEKTSFSELMKVKCVKK
ALIIIMFQFFCFQLSGANAVTFYAQQIFNDAAMNIESSIAAIIVTTFQFITSVIAVRYIN
LYGRKKMICTFNLFLVLSLMSLGIYFILKDNNYFLIRSLSWLPLLSMCVYLVTFCLGMGP
VTYIWLGELFIQNNAKKTIAPLGQMINHTLTFLIGLFFPLLTNLIGSGFIFFSFAVVTVI
DIIFIILFVPETNGKTSEEIQNALSR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g11244.t1 | Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 1 | 445 | 2.6E-90 |
| 2 | g11244.t1 | PANTHER | PTHR48021:SF63 | GH07001P-RELATED | 7 | 443 | 2.4E-102 |
| 3 | g11244.t1 | PANTHER | PTHR48021 | - | 7 | 443 | 2.4E-102 |
| 4 | g11244.t1 | PRINTS | PR00171 | Sugar transporter signature | 102 | 121 | 2.7E-11 |
| 5 | g11244.t1 | PRINTS | PR00171 | Sugar transporter signature | 252 | 262 | 2.7E-11 |
| 6 | g11244.t1 | PRINTS | PR00171 | Sugar transporter signature | 344 | 365 | 2.7E-11 |
| 1 | g11244.t1 | Pfam | PF00083 | Sugar (and other) transporter | 11 | 443 | 1.4E-70 |
| 11 | g11244.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 8 | - |
| 27 | g11244.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 9 | 33 | - |
| 20 | g11244.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 34 | 44 | - |
| 29 | g11244.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 45 | 64 | - |
| 15 | g11244.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 65 | 75 | - |
| 28 | g11244.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 76 | 94 | - |
| 19 | g11244.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 95 | 99 | - |
| 32 | g11244.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 100 | 123 | - |
| 9 | g11244.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 124 | 134 | - |
| 24 | g11244.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 135 | 156 | - |
| 21 | g11244.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 157 | 161 | - |
| 23 | g11244.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 162 | 180 | - |
| 13 | g11244.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 181 | 240 | - |
| 22 | g11244.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 241 | 265 | - |
| 18 | g11244.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 266 | 276 | - |
| 25 | g11244.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 277 | 296 | - |
| 14 | g11244.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 297 | 307 | - |
| 26 | g11244.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 308 | 328 | - |
| 17 | g11244.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 329 | 339 | - |
| 31 | g11244.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 340 | 366 | - |
| 12 | g11244.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 367 | 377 | - |
| 30 | g11244.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 378 | 398 | - |
| 16 | g11244.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 399 | 403 | - |
| 33 | g11244.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 404 | 429 | - |
| 10 | g11244.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 430 | 446 | - |
| 46 | g11244.t1 | ProSitePatterns | PS00217 | Sugar transport proteins signature 2. | 107 | 132 | - |
| 47 | g11244.t1 | ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 7 | 433 | 28.264 |
| 7 | g11244.t1 | SUPERFAMILY | SSF103473 | MFS general substrate transporter | 7 | 441 | 6.54E-43 |
| 42 | g11244.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 13 | 32 | - |
| 44 | g11244.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 47 | 69 | - |
| 36 | g11244.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 76 | 98 | - |
| 43 | g11244.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 102 | 124 | - |
| 37 | g11244.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 137 | 159 | - |
| 39 | g11244.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 169 | 188 | - |
| 41 | g11244.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 242 | 264 | - |
| 40 | g11244.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 279 | 301 | - |
| 35 | g11244.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 308 | 328 | - |
| 34 | g11244.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 343 | 365 | - |
| 45 | g11244.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 378 | 400 | - |
| 38 | g11244.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 405 | 427 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0055085 | transmembrane transport | BP |
| GO:0016021 | integral component of membrane | CC |
| GO:0022857 | transmembrane transporter activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed