General information for g11263.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Type II inositol 1,4,5-trisphosphate 5-phosphatase.
Parent gene
- The parent gene g11263 is located on chr_1: 15158026..15159937 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11263 | g11263.t4 | TSS | g11263.t4 | 15155165 | 15155165 |
| chr_1 | g11263 | g11263.t4 | isoform | g11263.t4 | 15155763 | 15156587 |
| chr_1 | g11263 | g11263.t4 | exon | g11263.t4.exon1 | 15155763 | 15156457 |
| chr_1 | g11263 | g11263.t4 | cds | g11263.t4.CDS1 | 15155794 | 15156457 |
| chr_1 | g11263 | g11263.t4 | exon | g11263.t4.exon2 | 15156522 | 15156587 |
| chr_1 | g11263 | g11263.t4 | cds | g11263.t4.CDS2 | 15156522 | 15156586 |
| chr_1 | g11263 | g11263.t4 | TTS | g11263.t4 | NA | NA |
Sequences
>g11263.t4 Gene=g11263 Length=761
AGAGTATTCTGAAGAGAATCATGGAAATTTCATGTGGCTTGATGCTTATAAAAGCTCAGA
TCTCTCTGAAATTGATCTTGATATTGCAACAAATAAACTTCCGCCTAAAAATCGTGAATC
AAAATTCAGAGAAGAGTTGGAGCGTAGAAAACCGGAATATACAATTTATGAGCCATATAA
AATATTTTGTGCAACGTGGAATGTTAACTTACAACAGCCAAAAGAAGATTTAGTGTTACG
TGAATGGCTCTCAACCACTGAAGATGCGCCAGATATTTATGCCATCGGCCTACAAGAAAT
TGATATGTCAGCTGAGACAATTATAAGGAGCGAAACACGTCCTGATTACAATTGGATCGC
TAAAATTCTTGAAGGTGTACATCCTGGTGATGCATATGAAGAATTAATTTCTGTTAGATT
TGTTGGAATGATGTTGACTATTGTTATTAAACAATCACTAAGAAGTTCAGTATCAAAAAT
TACAACTTCGATGGTAGGAACTGGAACATTGAATTTCGGTAATAAAGGCGGTGTTGGTGT
TAGTCTTCAACTCAATGAAAATTTTTTGTGTTTCATTAATTCACATCTTGCTGCACATGT
TCAAGAGTTTGAACGAAGAAATGAAGATCATGATGAAATTTTAAGAAGAATGCAATTTAA
AGATGGTTTTAGAACCCGAAATATTCTTGAACATGATCAAATATTTTGGATAGGCGATCT
CAATTATCGTATTGCAACAGCAATTGATGATGGGCAAATAA
>g11263.t4 Gene=g11263 Length=243
MWLDAYKSSDLSEIDLDIATNKLPPKNRESKFREELERRKPEYTIYEPYKIFCATWNVNL
QQPKEDLVLREWLSTTEDAPDIYAIGLQEIDMSAETIIRSETRPDYNWIAKILEGVHPGD
AYEELISVRFVGMMLTIVIKQSLRSSVSKITTSMVGTGTLNFGNKGGVGVSLQLNENFLC
FINSHLAAHVQEFERRNEDHDEILRRMQFKDGFRTRNILEHDQIFWIGDLNYRIATAIDD
GQI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g11263.t4 | Gene3D | G3DSA:3.60.10.10 | - | 25 | 242 | 0e+00 |
| 2 | g11263.t4 | PANTHER | PTHR11200 | INOSITOL 5-PHOSPHATASE | 29 | 235 | 0e+00 |
| 3 | g11263.t4 | PANTHER | PTHR11200:SF163 | TYPE II INOSITOL 1,4,5-TRISPHOSPHATE 5-PHOSPHATASE | 29 | 235 | 0e+00 |
| 1 | g11263.t4 | Pfam | PF03372 | Endonuclease/Exonuclease/phosphatase family | 54 | 232 | 0e+00 |
| 5 | g11263.t4 | SMART | SM00128 | i5p_5 | 47 | 242 | 5e-07 |
| 4 | g11263.t4 | SUPERFAMILY | SSF56219 | DNase I-like | 30 | 240 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0046856 | phosphatidylinositol dephosphorylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
