Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Chymotrypsin-1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11269 g11269.t18 TSS g11269.t18 15274498 15274498
chr_1 g11269 g11269.t18 isoform g11269.t18 15274515 15277320
chr_1 g11269 g11269.t18 exon g11269.t18.exon1 15274515 15274569
chr_1 g11269 g11269.t18 cds g11269.t18.CDS1 15274515 15274569
chr_1 g11269 g11269.t18 exon g11269.t18.exon2 15274626 15274667
chr_1 g11269 g11269.t18 cds g11269.t18.CDS2 15274626 15274667
chr_1 g11269 g11269.t18 exon g11269.t18.exon3 15275270 15275380
chr_1 g11269 g11269.t18 cds g11269.t18.CDS3 15275270 15275380
chr_1 g11269 g11269.t18 exon g11269.t18.exon4 15275451 15275595
chr_1 g11269 g11269.t18 cds g11269.t18.CDS4 15275451 15275595
chr_1 g11269 g11269.t18 exon g11269.t18.exon5 15275672 15275788
chr_1 g11269 g11269.t18 cds g11269.t18.CDS5 15275672 15275788
chr_1 g11269 g11269.t18 exon g11269.t18.exon6 15276455 15276601
chr_1 g11269 g11269.t18 cds g11269.t18.CDS6 15276455 15276530
chr_1 g11269 g11269.t18 exon g11269.t18.exon7 15276659 15276692
chr_1 g11269 g11269.t18 exon g11269.t18.exon8 15276848 15276903
chr_1 g11269 g11269.t18 exon g11269.t18.exon9 15277264 15277320
chr_1 g11269 g11269.t18 TTS g11269.t18 15277409 15277409

Sequences

>g11269.t18 Gene=g11269 Length=764
ATGATTCGTCAAGTATTTTTATTAGTGACATTGGCAGTTGCTGCCTTTGCAGGACCCCTT
TCTGATAGATTCTTGAATGGAAGAATTGTTGGTGGTGCTCCAGCAGTTGATGGACAATTC
CCATATCAAGTTTCTCTTCGTACATTCCCTGCACTGGGACATTTCTGTGGTGGATCAATT
ATTCAAGAACATTGGGTTCTTTCAGCAGCTCATTGCACAATCAACCGCACACCTGCCAAT
ACCCGTGTCGTTGCTGGTACAGTTCTTCTTAATGGTGGCGCAAATCCTCAACTTCATGAT
GTCGAGAGAATTGTCAATCATCCAAACTACGATTCAGCCTTAATTGCTCAAGACGTTTGC
GTCATTCGAGTGACAAGTCCGTTCATATTCACGGCAAATGTTCGTGCTATTCCTTATGCC
AGTCACTTTACTGGTGGTGGTGTTGATGCCGTTGTTTCAGGATGGGGTAAGCGGCACAGC
TGTCACTGGTGGACCTGCACCAAACAACTTACAATGGATCAGAAAAACAACGCTTACAAA
TGCTGATTGCCGTGCTCGTATGGGTACTGCTAATGAACGATTTGTTATTGACAGTAAAAT
TTGCACATTCACACAAGCTGGACAAGGAATCTGTCAAGGAGACTCAGGCGGTCCATTAAC
TGCAGGTGGATATGTCATTGGTATTGTTAGCTGGAATATTCCTGTAAGATGGATATGATC
GTGTTTCATACTGGCACAGTTGGATTACTCAAAACATCAGTTAA

>g11269.t18 Gene=g11269 Length=181
MIRQVFLLVTLAVAAFAGPLSDRFLNGRIVGGAPAVDGQFPYQVSLRTFPALGHFCGGSI
IQEHWVLSAAHCTINRTPANTRVVAGTVLLNGGANPQLHDVERIVNHPNYDSALIAQDVC
VIRVTSPFIFTANVRAIPYASHFTGGGVDAVVSGWGKRHSCHWWTCTKQLTMDQKNNAYK
C

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g11269.t18 CDD cd00190 Tryp_SPc 29 157 3.20821E-40
8 g11269.t18 Gene3D G3DSA:2.40.10.10 - 29 84 3.8E-19
9 g11269.t18 Gene3D G3DSA:2.40.10.10 - 85 158 6.7E-12
2 g11269.t18 PANTHER PTHR24276 POLYSERASE-RELATED 1 161 1.7E-30
3 g11269.t18 PANTHER PTHR24276:SF78 AT20289P-RELATED 1 161 1.7E-30
5 g11269.t18 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 57 72 1.4E-5
4 g11269.t18 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 114 128 1.4E-5
1 g11269.t18 Pfam PF00089 Trypsin 29 171 1.6E-28
11 g11269.t18 Phobius SIGNAL_PEPTIDE Signal peptide region 1 17 -
12 g11269.t18 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 4 -
13 g11269.t18 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 5 13 -
14 g11269.t18 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 14 17 -
10 g11269.t18 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 18 181 -
17 g11269.t18 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 67 72 -
18 g11269.t18 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 29 157 15.981
16 g11269.t18 SMART SM00020 trypsin_2 28 181 2.1E-8
6 g11269.t18 SUPERFAMILY SSF50494 Trypsin-like serine proteases 5 161 1.62E-39
7 g11269.t18 SignalP_EUK SignalP-noTM SignalP-noTM 1 17 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed