Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Chymotrypsin-1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11269 g11269.t24 TSS g11269.t24 15274498 15274498
chr_1 g11269 g11269.t24 isoform g11269.t24 15274515 15277320
chr_1 g11269 g11269.t24 exon g11269.t24.exon1 15274515 15274569
chr_1 g11269 g11269.t24 cds g11269.t24.CDS1 15274515 15274569
chr_1 g11269 g11269.t24 exon g11269.t24.exon2 15274626 15274667
chr_1 g11269 g11269.t24 cds g11269.t24.CDS2 15274626 15274667
chr_1 g11269 g11269.t24 exon g11269.t24.exon3 15275270 15275380
chr_1 g11269 g11269.t24 cds g11269.t24.CDS3 15275270 15275380
chr_1 g11269 g11269.t24 exon g11269.t24.exon4 15275451 15275595
chr_1 g11269 g11269.t24 cds g11269.t24.CDS4 15275451 15275595
chr_1 g11269 g11269.t24 exon g11269.t24.exon5 15275672 15275784
chr_1 g11269 g11269.t24 cds g11269.t24.CDS5 15275672 15275784
chr_1 g11269 g11269.t24 exon g11269.t24.exon6 15276455 15276577
chr_1 g11269 g11269.t24 cds g11269.t24.CDS6 15276455 15276577
chr_1 g11269 g11269.t24 exon g11269.t24.exon7 15276659 15276692
chr_1 g11269 g11269.t24 cds g11269.t24.CDS7 15276659 15276692
chr_1 g11269 g11269.t24 exon g11269.t24.exon8 15276848 15276903
chr_1 g11269 g11269.t24 cds g11269.t24.CDS8 15276848 15276903
chr_1 g11269 g11269.t24 exon g11269.t24.exon9 15277264 15277320
chr_1 g11269 g11269.t24 cds g11269.t24.CDS9 15277264 15277274
chr_1 g11269 g11269.t24 TTS g11269.t24 15277409 15277409

Sequences

>g11269.t24 Gene=g11269 Length=736
ATGATTCGTCAAGTATTTTTATTAGTGACATTGGCAGTTGCTGCCTTTGCAGGACCCCTT
TCTGATAGATTCTTGAATGGAAGAATTGTTGGTGGTGCTCCAGCAGTTGATGGACAATTC
CCATATCAAGTTTCTCTTCGTACATTCCCTGCACTGGGACATTTCTGTGGTGGATCAATT
ATTCAAGAACATTGGGTTCTTTCAGCAGCTCATTGCACAATCAACCGCACACCTGCCAAT
ACCCGTGTCGTTGCTGGTACAGTTCTTCTTAATGGTGGCGCAAATCCTCAACTTCATGAT
GTCGAGAGAATTGTCAATCATCCAAACTACGATTCAGCCTTAATTGCTCAAGACGTTTGC
GTCATTCGAGTGACAAGTCCGTTCATATTCACGGCAAATGTTCGTGCTATTCCTTATGCC
AGTCACTTTACTGGTGGTGGTGTTGATGCCGTTGTTTCAGGATGGGGCGGCACAGCTGTC
ACTGGTGGACCTGCACCAAACAACTTACAATGGATCAGAAAAACAACGCTTACAAATGCT
GATTGCCGTGCTCGTATGGGTACTGCTAATGAACGATTTGTTATTGACACTGGACAAGGA
ATCTGTCAAGGAGACTCAGGCGGTCCATTAACTGCAGGTGGATATGTCATTGGTATTGTT
AGCTGGAATATTCCTGTAAGATGGATATGATCGTGTTTCATACTGGCACAGTTGGATTAC
TCAAAACATCAGTTAA

>g11269.t24 Gene=g11269 Length=229
MIRQVFLLVTLAVAAFAGPLSDRFLNGRIVGGAPAVDGQFPYQVSLRTFPALGHFCGGSI
IQEHWVLSAAHCTINRTPANTRVVAGTVLLNGGANPQLHDVERIVNHPNYDSALIAQDVC
VIRVTSPFIFTANVRAIPYASHFTGGGVDAVVSGWGGTAVTGGPAPNNLQWIRKTTLTNA
DCRARMGTANERFVIDTGQGICQGDSGGPLTAGGYVIGIVSWNIPVRWI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g11269.t24 CDD cd00190 Tryp_SPc 29 222 6.2417E-57
9 g11269.t24 Gene3D G3DSA:2.40.10.10 - 29 224 1.6E-47
10 g11269.t24 Gene3D G3DSA:2.40.10.10 - 41 133 1.6E-47
2 g11269.t24 PANTHER PTHR24276 POLYSERASE-RELATED 1 223 3.5E-44
3 g11269.t24 PANTHER PTHR24276:SF78 AT20289P-RELATED 1 223 3.5E-44
6 g11269.t24 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 57 72 3.3E-12
4 g11269.t24 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 114 128 3.3E-12
5 g11269.t24 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 199 211 3.3E-12
1 g11269.t24 Pfam PF00089 Trypsin 29 223 1.8E-43
12 g11269.t24 Phobius SIGNAL_PEPTIDE Signal peptide region 1 17 -
13 g11269.t24 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 4 -
14 g11269.t24 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 5 13 -
15 g11269.t24 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 14 17 -
11 g11269.t24 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 18 229 -
18 g11269.t24 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 67 72 -
19 g11269.t24 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 200 211 -
20 g11269.t24 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 29 229 23.867
17 g11269.t24 SMART SM00020 trypsin_2 28 229 3.6E-46
7 g11269.t24 SUPERFAMILY SSF50494 Trypsin-like serine proteases 5 225 3.91E-55
8 g11269.t24 SignalP_EUK SignalP-noTM SignalP-noTM 1 17 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed