General information for g11269.t44
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11269 is located on chr_1: 15275568..15277541 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11269 | g11269.t44 | TSS | g11269.t44 | 15274498 | 15274498 |
| chr_1 | g11269 | g11269.t44 | isoform | g11269.t44 | 15274515 | 15277320 |
| chr_1 | g11269 | g11269.t44 | exon | g11269.t44.exon1 | 15274515 | 15274569 |
| chr_1 | g11269 | g11269.t44 | cds | g11269.t44.CDS1 | 15274515 | 15274569 |
| chr_1 | g11269 | g11269.t44 | exon | g11269.t44.exon2 | 15274626 | 15274664 |
| chr_1 | g11269 | g11269.t44 | cds | g11269.t44.CDS2 | 15274626 | 15274664 |
| chr_1 | g11269 | g11269.t44 | exon | g11269.t44.exon3 | 15275270 | 15275380 |
| chr_1 | g11269 | g11269.t44 | cds | g11269.t44.CDS3 | 15275270 | 15275380 |
| chr_1 | g11269 | g11269.t44 | exon | g11269.t44.exon4 | 15275482 | 15275595 |
| chr_1 | g11269 | g11269.t44 | cds | g11269.t44.CDS4 | 15275482 | 15275585 |
| chr_1 | g11269 | g11269.t44 | exon | g11269.t44.exon5 | 15275672 | 15275784 |
| chr_1 | g11269 | g11269.t44 | exon | g11269.t44.exon6 | 15276455 | 15276601 |
| chr_1 | g11269 | g11269.t44 | exon | g11269.t44.exon7 | 15276659 | 15276692 |
| chr_1 | g11269 | g11269.t44 | exon | g11269.t44.exon8 | 15276848 | 15276903 |
| chr_1 | g11269 | g11269.t44 | exon | g11269.t44.exon9 | 15277264 | 15277320 |
| chr_1 | g11269 | g11269.t44 | TTS | g11269.t44 | 15277409 | 15277409 |
Sequences
>g11269.t44 Gene=g11269 Length=726
ATGATTCGTCAAGTATTTTTATTAGTGACATTGGCAGTTGCTGCCTTTGCAGGACCCCTT
TCTGATAGATTCTTGAATGGAAGAATTGTTGGTGCTCCAGCAGTTGATGGACAATTCCCA
TATCAAGTTTCTCTTCGTACATTCCCTGCACTGGGACATTTCTGTGGTGGATCAATTATT
CAAGAACATTGGGTTCTTTCAGCAGTACCCGTGTCGTTGCTGGTACAGTTCTTCTTAATG
GTGGCGCAAATCCTCAACTTCATGATGTCGAGAGAATTGTCAATCATCCAAACTACGATT
CAGCCTTAATTGCTCAAGACGTTTGCGTCATTCGAGTGACAAGTCCGTTCATATTCACGG
CAAATGTTCGTGCTATTCCTTATGCCAGTCACTTTACTGGTGGTGGTGTTGATGCCGTTG
TTTCAGGATGGGGCGGCACAGCTGTCACTGGTGGACCTGCACCAAACAACTTACAATGGA
TCAGAAAAACAACGCTTACAAATGCTGATTGCCGTGCTCGTATGGGTACTGCTAATGAAC
GATTTGTTATTGACAGTAAAATTTGCACATTCACACAAGCTGGACAAGGAATCTGTCAAG
GAGACTCAGGCGGTCCATTAACTGCAGGTGGATATGTCATTGGTATTGTTAGCTGGAATA
TTCCTGTAAGATGGATATGATCGTGTTTCATACTGGCACAGTTGGATTACTCAAAACATC
AGTTAA
>g11269.t44 Gene=g11269 Length=102
MIRQVFLLVTLAVAAFAGPLSDRFLNGRIVGAPAVDGQFPYQVSLRTFPALGHFCGGSII
QEHWVLSAVPVSLLVQFFLMVAQILNFMMSRELSIIQTTIQP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g11269.t44 | Gene3D | G3DSA:2.40.10.10 | - | 29 | 69 | 7.1E-12 |
| 1 | g11269.t44 | Pfam | PF00089 | Trypsin | 29 | 68 | 5.3E-8 |
| 9 | g11269.t44 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 17 | - |
| 10 | g11269.t44 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 4 | - |
| 11 | g11269.t44 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 5 | 13 | - |
| 13 | g11269.t44 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 14 | 17 | - |
| 8 | g11269.t44 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 18 | 63 | - |
| 12 | g11269.t44 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 64 | 85 | - |
| 7 | g11269.t44 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 86 | 102 | - |
| 4 | g11269.t44 | SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 5 | 69 | 3.58E-13 |
| 5 | g11269.t44 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 17 | - |
| 3 | g11269.t44 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 5 | 27 | - |
| 2 | g11269.t44 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 63 | 85 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed