Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11269 g11269.t6 TSS g11269.t6 15274498 15274498
chr_1 g11269 g11269.t6 isoform g11269.t6 15274515 15276897
chr_1 g11269 g11269.t6 exon g11269.t6.exon1 15274515 15274569
chr_1 g11269 g11269.t6 exon g11269.t6.exon2 15274626 15274667
chr_1 g11269 g11269.t6 cds g11269.t6.CDS1 15274647 15274667
chr_1 g11269 g11269.t6 exon g11269.t6.exon3 15275270 15275380
chr_1 g11269 g11269.t6 cds g11269.t6.CDS2 15275270 15275380
chr_1 g11269 g11269.t6 exon g11269.t6.exon4 15275610 15275784
chr_1 g11269 g11269.t6 cds g11269.t6.CDS3 15275610 15275784
chr_1 g11269 g11269.t6 exon g11269.t6.exon5 15276455 15276601
chr_1 g11269 g11269.t6 cds g11269.t6.CDS4 15276455 15276601
chr_1 g11269 g11269.t6 exon g11269.t6.exon6 15276659 15276692
chr_1 g11269 g11269.t6 cds g11269.t6.CDS5 15276659 15276692
chr_1 g11269 g11269.t6 exon g11269.t6.exon7 15276848 15276897
chr_1 g11269 g11269.t6 cds g11269.t6.CDS6 15276848 15276896
chr_1 g11269 g11269.t6 TTS g11269.t6 15277409 15277409

Sequences

>g11269.t6 Gene=g11269 Length=614
ATGATTCGTCAAGTATTTTTATTAGTGACATTGGCAGTTGCTGCCTTTGCAGGACCCCTT
TCTGATAGATTCTTGAATGGAAGAATTGTTGGTGGTGCTCCAGCAGTTGATGGACAATTC
CCATATCAAGTTTCTCTTCGTACATTCCCTGCACTGGGACATTTCTGTGGTGGATCAATT
ATTCAAGAACATTGGGTTCTTTCAGCAGTTTATTCAATTTCACTTCGCAAAATTTTCTCA
AAAAAATTTTCCTCATTCAATTTTAATTAGCGTTTGCGTCATTCGAGTGACAAGTCCGTT
CATATTCACGGCAAATGTTCGTGCTATTCCTTATGCCAGTCACTTTACTGGTGGTGGTGT
TGATGCCGTTGTTTCAGGATGGGGCGGCACAGCTGTCACTGGTGGACCTGCACCAAACAA
CTTACAATGGATCAGAAAAACAACGCTTACAAATGCTGATTGCCGTGCTCGTATGGGTAC
TGCTAATGAACGATTTGTTATTGACAGTAAAATTTGCACATTCACACAAGCTGGACAAGG
AATCTGTCAAGGAGACTCAGGCGGTCCATTAACTGCAGGTGGATATGTCATTGGTATTGT
TAGCTGGAATATTC

>g11269.t6 Gene=g11269 Length=179
MEELLVVLQQLMDNSHIKFLFVHSLHWDISVVDQLFKNIGFFQQFIQFHFAKFSQKNFPH
SILISVCVIRVTSPFIFTANVRAIPYASHFTGGGVDAVVSGWGGTAVTGGPAPNNLQWIR
KTTLTNADCRARMGTANERFVIDSKICTFTQAGQGICQGDSGGPLTAGGYVIGIVSWNI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g11269.t6 Gene3D G3DSA:2.40.10.10 - 64 83 4.3E-22
8 g11269.t6 Gene3D G3DSA:2.40.10.10 - 84 178 4.3E-22
2 g11269.t6 PANTHER PTHR24276 POLYSERASE-RELATED 61 178 1.4E-17
3 g11269.t6 PANTHER PTHR24276:SF89 IP07603P 61 178 1.4E-17
1 g11269.t6 Pfam PF00089 Trypsin 64 178 1.4E-19
6 g11269.t6 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 155 166 -
9 g11269.t6 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 66 179 11.591
5 g11269.t6 SMART SM00020 trypsin_2 23 179 4.2E-5
4 g11269.t6 SUPERFAMILY SSF50494 Trypsin-like serine proteases 26 179 3.14E-25

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed