General information for g11269.t62
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11269 is located on chr_1: 15275568..15277541 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11269 | g11269.t62 | TSS | g11269.t62 | 15274498 | 15274498 |
| chr_1 | g11269 | g11269.t62 | isoform | g11269.t62 | 15274515 | 15277413 |
| chr_1 | g11269 | g11269.t62 | exon | g11269.t62.exon1 | 15274515 | 15274569 |
| chr_1 | g11269 | g11269.t62 | exon | g11269.t62.exon2 | 15275244 | 15275380 |
| chr_1 | g11269 | g11269.t62 | exon | g11269.t62.exon3 | 15275451 | 15275595 |
| chr_1 | g11269 | g11269.t62 | exon | g11269.t62.exon4 | 15275672 | 15275784 |
| chr_1 | g11269 | g11269.t62 | exon | g11269.t62.exon5 | 15276455 | 15276601 |
| chr_1 | g11269 | g11269.t62 | cds | g11269.t62.CDS1 | 15276544 | 15276601 |
| chr_1 | g11269 | g11269.t62 | exon | g11269.t62.exon6 | 15276659 | 15276692 |
| chr_1 | g11269 | g11269.t62 | cds | g11269.t62.CDS2 | 15276659 | 15276692 |
| chr_1 | g11269 | g11269.t62 | exon | g11269.t62.exon7 | 15276848 | 15276903 |
| chr_1 | g11269 | g11269.t62 | cds | g11269.t62.CDS3 | 15276848 | 15276903 |
| chr_1 | g11269 | g11269.t62 | exon | g11269.t62.exon8 | 15277264 | 15277413 |
| chr_1 | g11269 | g11269.t62 | cds | g11269.t62.CDS4 | 15277264 | 15277274 |
| chr_1 | g11269 | g11269.t62 | TTS | g11269.t62 | 15277409 | 15277409 |
Sequences
>g11269.t62 Gene=g11269 Length=837
ATGATTCGTCAAGTATTTTTATTAGTGACATTGGCAGTTGCTGCCTTTGCAGGACTTTTT
TTTATTTCTATCATAAAATAGCTCCAGCAGTTGATGGACAATTCCCATATCAAGTTTCTC
TTCGTACATTCCCTGCACTGGGACATTTCTGTGGTGGATCAATTATTCAAGAACATTGGG
TTCTTTCAGCAGCTCATTGCACAATCAACCGCACACCTGCCAATACCCGTGTCGTTGCTG
GTACAGTTCTTCTTAATGGTGGCGCAAATCCTCAACTTCATGATGTCGAGAGAATTGTCA
ATCATCCAAACTACGATTCAGCCTTAATTGCTCAAGACGTTTGCGTCATTCGAGTGACAA
GTCCGTTCATATTCACGGCAAATGTTCGTGCTATTCCTTATGCCAGTCACTTTACTGGTG
GTGGTGTTGATGCCGTTGTTTCAGGATGGGGCGGCACAGCTGTCACTGGTGGACCTGCAC
CAAACAACTTACAATGGATCAGAAAAACAACGCTTACAAATGCTGATTGCCGTGCTCGTA
TGGGTACTGCTAATGAACGATTTGTTATTGACAGTAAAATTTGCACATTCACACAAGCTG
GACAAGGAATCTGTCAAGGAGACTCAGGCGGTCCATTAACTGCAGGTGGATATGTCATTG
GTATTGTTAGCTGGAATATTCCTGTAAGATGGATATGATCGTGTTTCATACTGGCACAGT
TGGATTACTCAAAACATCAGTTAAATGGCTACATTTATTGCAATTATCATCCAGAAATTT
GATGCTGTATTTTAAATCAATTCATTTTGAATAAATTTTTATTTGCAAAATTTAAAA
>g11269.t62 Gene=g11269 Length=52
MGTANERFVIDSKICTFTQAGQGICQGDSGGPLTAGGYVIGIVSWNIPVRWI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g11269.t62 | Gene3D | G3DSA:2.40.10.10 | - | 2 | 50 | 1.2E-13 |
| 1 | g11269.t62 | Pfam | PF00089 | Trypsin | 9 | 46 | 7.4E-10 |
| 3 | g11269.t62 | ProSitePatterns | PS00135 | Serine proteases, trypsin family, serine active site. | 23 | 34 | - |
| 2 | g11269.t62 | SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 8 | 48 | 1.26E-12 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed