Gene loci information

Transcript annotation

  • This transcript has been annotated as Endophilin-B1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1127 g1127.t1 TSS g1127.t1 8332786 8332786
chr_3 g1127 g1127.t1 isoform g1127.t1 8332873 8335982
chr_3 g1127 g1127.t1 exon g1127.t1.exon1 8332873 8332962
chr_3 g1127 g1127.t1 cds g1127.t1.CDS1 8332873 8332962
chr_3 g1127 g1127.t1 exon g1127.t1.exon2 8333037 8333301
chr_3 g1127 g1127.t1 cds g1127.t1.CDS2 8333037 8333301
chr_3 g1127 g1127.t1 exon g1127.t1.exon3 8333357 8333413
chr_3 g1127 g1127.t1 cds g1127.t1.CDS3 8333357 8333413
chr_3 g1127 g1127.t1 exon g1127.t1.exon4 8333477 8333655
chr_3 g1127 g1127.t1 cds g1127.t1.CDS4 8333477 8333655
chr_3 g1127 g1127.t1 exon g1127.t1.exon5 8334056 8334246
chr_3 g1127 g1127.t1 cds g1127.t1.CDS5 8334056 8334246
chr_3 g1127 g1127.t1 exon g1127.t1.exon6 8335633 8335798
chr_3 g1127 g1127.t1 cds g1127.t1.CDS6 8335633 8335798
chr_3 g1127 g1127.t1 exon g1127.t1.exon7 8335872 8335982
chr_3 g1127 g1127.t1 cds g1127.t1.CDS7 8335872 8335982
chr_3 g1127 g1127.t1 TTS g1127.t1 8336639 8336639

Sequences

>g1127.t1 Gene=g1127 Length=1059
ATGAATATGAAATTACCCAGCTTTAATGTGAAAGACTTGATGAGGGAAGCTGGCACAACA
ATTTCCACACAAGTTTCTCGTGTAGTTCAGCTCACTGAAGAAAAATTAAATCTGGTTCCA
GACAAAACTGAATACGATAATAATTTTGAGGCTTTAATTGAACGTCAAGAAAGCACTAAA
GCATTGACAGAGAAAATTGTTAAAGATTGTGAATCAGTACTAGTGCCAGTACTTGGAAAT
CGAGTTGAAGACTTTATTTTTGAAAAAATTGAAAAAAAGAAACCGCAACGATTATCAAAT
ATTGAGTTTCTTGGATTAGATTTCATAGAAGCTGGTGGTGTTTTTGGAAGTGATGGTTCA
TATGGTAGCGCTCTTATAAAGACTGGCCAAGCTGAACAAAAACTCGGACAATGTGAACGA
GATTTCATTGCGAATACTGGAATGTGCTTTTTGCAACCACTTAAAAAATTCCTCGATGGT
GAAATGCGAACTATCACAAAAGAAAAATCTGTATTGGAAGCAAAACGTTTAGATTTAGAT
TCTGCAAAATCAAGAGTGAGAAAAGCTCGATCTTTAATAGGACAGCAGACGGCAGAAAGA
GACTTGAGAGTTGCACAATCAGAATATGACAGACAATTGGAAATTACAAAACTTTTATTA
GAAGGTCTCGGATCAACTCAAGCTAATCATTTACGTTATTTACATGCATTTGTTGAATCA
CAAGTCAGATATTACGCTCAATGTAACAAAATCATGCATGAATTACAGAAAGAATTGGCA
AGTTTGGGAGGTGATGGTCCAAAATATGAAATAGTGGTCACAGATGAAGAAATTGAAGCT
GCTTCGCGTAATAACATCCATTCAGAGCCATTAAATTATCAACGAGCAAGAGTCTTATGT
TCATATGACGCAAAGGACAATTCTGAATTGAATTTAGTTGCAAATGAGGTGATATTTGTA
GCAGAATGCTCTCCGCCTCATTCAGATTACATGCATGGCAAGCAGGGATTGCTAAAAGGT
TTAGTTCCAAAGGCATTTTTAGAAATTCTCGAAGATTAA

>g1127.t1 Gene=g1127 Length=352
MNMKLPSFNVKDLMREAGTTISTQVSRVVQLTEEKLNLVPDKTEYDNNFEALIERQESTK
ALTEKIVKDCESVLVPVLGNRVEDFIFEKIEKKKPQRLSNIEFLGLDFIEAGGVFGSDGS
YGSALIKTGQAEQKLGQCERDFIANTGMCFLQPLKKFLDGEMRTITKEKSVLEAKRLDLD
SAKSRVRKARSLIGQQTAERDLRVAQSEYDRQLEITKLLLEGLGSTQANHLRYLHAFVES
QVRYYAQCNKIMHELQKELASLGGDGPKYEIVVTDEEIEAASRNNIHSEPLNYQRARVLC
SYDAKDNSELNLVANEVIFVAECSPPHSDYMHGKQGLLKGLVPKAFLEILED

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g1127.t1 CDD cd07594 BAR_Endophilin_B 30 259 0.0000000
15 g1127.t1 CDD cd11802 SH3_Endophilin_B 295 346 0.0000000
12 g1127.t1 Gene3D G3DSA:1.20.1270.60 Arfaptin 40 266 0.0000000
11 g1127.t1 Gene3D G3DSA:2.30.30.40 SH3 Domains 292 351 0.0000000
4 g1127.t1 PANTHER PTHR14167:SF52 ENDOPHILIN-B1 7 260 0.0000000
6 g1127.t1 PANTHER PTHR14167 SH3 DOMAIN-CONTAINING 7 260 0.0000000
3 g1127.t1 PANTHER PTHR14167:SF52 ENDOPHILIN-B1 289 350 0.0000000
5 g1127.t1 PANTHER PTHR14167 SH3 DOMAIN-CONTAINING 289 350 0.0000000
1 g1127.t1 Pfam PF03114 BAR domain 24 260 0.0000000
2 g1127.t1 Pfam PF14604 Variant SH3 domain 298 348 0.0000000
14 g1127.t1 ProSiteProfiles PS51021 BAR domain profile. 34 268 25.7910000
13 g1127.t1 ProSiteProfiles PS50002 Src homology 3 (SH3) domain profile. 291 352 14.1860000
9 g1127.t1 SMART SM00721 5bar 20 261 0.0000000
10 g1127.t1 SMART SM00326 SH3_2 294 351 0.0000064
7 g1127.t1 SUPERFAMILY SSF103657 BAR/IMD domain-like 26 260 0.0000000
8 g1127.t1 SUPERFAMILY SSF50044 SH3-domain 291 351 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF
GO:0005737 cytoplasm CC

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values