General information for g1127.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g1127 is located on chr_3: 8335872..8336651 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1127 | g1127.t2 | isoform | g1127.t2 | 8334059 | 8336651 |
| chr_3 | g1127 | g1127.t2 | exon | g1127.t2.exon1 | 8334059 | 8334246 |
| chr_3 | g1127 | g1127.t2 | cds | g1127.t2.CDS1 | 8334218 | 8334246 |
| chr_3 | g1127 | g1127.t2 | exon | g1127.t2.exon2 | 8335633 | 8335798 |
| chr_3 | g1127 | g1127.t2 | cds | g1127.t2.CDS2 | 8335633 | 8335798 |
| chr_3 | g1127 | g1127.t2 | exon | g1127.t2.exon3 | 8335872 | 8336651 |
| chr_3 | g1127 | g1127.t2 | cds | g1127.t2.CDS3 | 8335872 | 8335982 |
| chr_3 | g1127 | g1127.t2 | TTS | g1127.t2 | 8337209 | 8337209 |
| chr_3 | g1127 | g1127.t2 | TSS | g1127.t2 | NA | NA |
Sequences
>g1127.t2 Gene=g1127 Length=1134
GAAAGAGACTTGAGAGTTGCACAATCAGAATATGACAGACAATTGGAAATTACAAAACTT
TTATTAGAAGGTCTCGGATCAACTCAAGCTAATCATTTACGTTATTTACATGCATTTGTT
GAATCACAAGTCAGATATTACGCTCAATGTAACAAAATCATGCATGAATTACAGAAAGAA
TTGGCAAGTTTGGGAGGTGATGGTCCAAAATATGAAATAGTGGTCACAGATGAAGAAATT
GAAGCTGCTTCGCGTAATAACATCCATTCAGAGCCATTAAATTATCAACGAGCAAGAGTC
TTATGTTCATATGACGCAAAGGACAATTCTGAATTGAATTTAGTTGCAAATGAGGTGATA
TTTGTAGCAGAATGCTCTCCGCCTCATTCAGATTACATGCATGGCAAGCAGGGATTGCTA
AAAGGTTTAGTTCCAAAGGCATTTTTAGAAATTCTCGAAGATTAAATTTTTCAATTTAAA
GAAAGTCAAAATTTGTTTATGTTATAAAAGACATTGTGTTTAAAAATTTAAGTTTGATTG
CGATAATTCTTGATACCTGATTTAAAATTAAATCTATTTATTTTGTAACCATTGATGATA
ATGTTACTAAAGAAAATTTTGTTTTCAACTATTGCCATTAATATATTACGATAAAAATTT
GCTGACAGTTCAGTGCAATTAAACAAAAGTTGTTCTTCATGTATTGCAAATTTTTGCAAC
GCTAAAAAATTATATCAATTAATTCTATCTTAAACTACTACTTAAAATTAAGCAAAGAAA
ATTGTAATGTTATTTAACGAAAAATATCTTCATGTAGTCAGTCTTCTAAACTTTTATTCA
CTGTTAAAAGTTCTGCAATCTTTATGGCATTAAATTTAAATTTTTATTTTTATTCTCCAC
TATAAAATTTTAATAAAATATTCTCACATACACTCCTATACATCTCCCTTCTACAAGAAA
ATTATATAATTACATATTTAATAGCAGAAAATATAATACCACCATAATGTACCTTATGAC
GAAAATTATATATGAAAAAAAAATTGAAGCCCCTAATAATTTAATTTACACAAAACTACT
ATAAATACATATTTAATGATCAACTGCCGTGAAAAAATGCACAGGAAGAAAAAA
>g1127.t2 Gene=g1127 Length=101
MHELQKELASLGGDGPKYEIVVTDEEIEAASRNNIHSEPLNYQRARVLCSYDAKDNSELN
LVANEVIFVAECSPPHSDYMHGKQGLLKGLVPKAFLEILED
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g1127.t2 | CDD | cd11802 | SH3_Endophilin_B | 44 | 95 | 0.0000000 |
| 4 | g1127.t2 | Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 41 | 100 | 0.0000000 |
| 1 | g1127.t2 | Pfam | PF14604 | Variant SH3 domain | 47 | 97 | 0.0000000 |
| 5 | g1127.t2 | ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 40 | 101 | 14.1860000 |
| 3 | g1127.t2 | SMART | SM00326 | SH3_2 | 43 | 100 | 0.0000064 |
| 2 | g1127.t2 | SUPERFAMILY | SSF50044 | SH3-domain | 40 | 100 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
