General information for g1128.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein roadkill.
Parent gene
- The parent gene g1128 is located on chr_3: 8337327..8340356 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1128 | g1128.t4 | TTS | g1128.t4 | 8337214 | 8337214 |
| chr_3 | g1128 | g1128.t4 | isoform | g1128.t4 | 8337327 | 8337929 |
| chr_3 | g1128 | g1128.t4 | exon | g1128.t4.exon1 | 8337327 | 8337435 |
| chr_3 | g1128 | g1128.t4 | cds | g1128.t4.CDS1 | 8337327 | 8337435 |
| chr_3 | g1128 | g1128.t4 | exon | g1128.t4.exon2 | 8337495 | 8337929 |
| chr_3 | g1128 | g1128.t4 | cds | g1128.t4.CDS2 | 8337495 | 8337895 |
| chr_3 | g1128 | g1128.t4 | TSS | g1128.t4 | 8338151 | 8338151 |
Sequences
>g1128.t4 Gene=g1128 Length=544
CAAACGTGATGGTGCAAAAAATCATTTAAAGTCTATGTTTGAATCAGGAAATGATGCTGA
TATCACAATTATGTCAGAAGGAAAAGAGCTCAAAGTTCATAATTTCATTTTAAAACGATC
AGAAGTTTTTTCGAAAATGTTTAGTGGTGAAATGAAGGAATCTCGAAATAGAATCGTAGT
TATTGAAGACATCAAACACGAAGTGATTGTTGAAATGTGCCGATATTTATATTACGATGA
AATTCCTAAAATTAAATCACTTGCTCTTCCTTTATTAGTTGCTGCTTCAAAATATTTAAT
CGATGATTTAGTTGAAGAATGTGAAGATTTTTTGATGACAAACATTACTCTTGACAATTA
TCATGAGGTTATAGTAATTGCTGATCAACTTAATAAGGAAAAGTTGCGAGAAGCTGCTAT
TGATTATATTATTACCAATTGTAAATCAATTTTCCCGTCTACTGCTTGGAAGGAATTAAA
AACTAGTCACGTGCAACTTGCATTGACTGTCATGGAAAAATTTATGTTAACTTTTCAACT
ATGA
>g1128.t4 Gene=g1128 Length=169
MFESGNDADITIMSEGKELKVHNFILKRSEVFSKMFSGEMKESRNRIVVIEDIKHEVIVE
MCRYLYYDEIPKIKSLALPLLVAASKYLIDDLVEECEDFLMTNITLDNYHEVIVIADQLN
KEKLREAAIDYIITNCKSIFPSTAWKELKTSHVQLALTVMEKFMLTFQL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g1128.t4 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 1 | 98 | 0.00 |
| 6 | g1128.t4 | Gene3D | G3DSA:1.25.40.420 | - | 103 | 167 | 0.00 |
| 2 | g1128.t4 | PANTHER | PTHR24413:SF213 | FI01029P-RELATED | 1 | 163 | 0.00 |
| 3 | g1128.t4 | PANTHER | PTHR24413 | SPECKLE-TYPE POZ PROTEIN | 1 | 163 | 0.00 |
| 1 | g1128.t4 | Pfam | PF00651 | BTB/POZ domain | 2 | 102 | 0.00 |
| 8 | g1128.t4 | ProSiteProfiles | PS50097 | BTB domain profile. | 8 | 74 | 13.86 |
| 5 | g1128.t4 | SMART | SM00225 | BTB_4 | 8 | 104 | 0.00 |
| 4 | g1128.t4 | SUPERFAMILY | SSF54695 | POZ domain | 1 | 102 | 0.00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
