General information for g1128.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein roadkill.
Parent gene
- The parent gene g1128 is located on chr_3: 8337327..8340356 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1128 | g1128.t8 | TTS | g1128.t8 | 8337214 | 8337214 |
| chr_3 | g1128 | g1128.t8 | isoform | g1128.t8 | 8337327 | 8340356 |
| chr_3 | g1128 | g1128.t8 | exon | g1128.t8.exon1 | 8337327 | 8337435 |
| chr_3 | g1128 | g1128.t8 | cds | g1128.t8.CDS1 | 8337327 | 8337435 |
| chr_3 | g1128 | g1128.t8 | exon | g1128.t8.exon2 | 8337495 | 8337967 |
| chr_3 | g1128 | g1128.t8 | cds | g1128.t8.CDS2 | 8337495 | 8337967 |
| chr_3 | g1128 | g1128.t8 | exon | g1128.t8.exon3 | 8338027 | 8338064 |
| chr_3 | g1128 | g1128.t8 | cds | g1128.t8.CDS3 | 8338027 | 8338064 |
| chr_3 | g1128 | g1128.t8 | exon | g1128.t8.exon4 | 8338126 | 8338340 |
| chr_3 | g1128 | g1128.t8 | cds | g1128.t8.CDS4 | 8338126 | 8338340 |
| chr_3 | g1128 | g1128.t8 | exon | g1128.t8.exon5 | 8338396 | 8338484 |
| chr_3 | g1128 | g1128.t8 | cds | g1128.t8.CDS5 | 8338396 | 8338484 |
| chr_3 | g1128 | g1128.t8 | exon | g1128.t8.exon6 | 8338547 | 8338705 |
| chr_3 | g1128 | g1128.t8 | cds | g1128.t8.CDS6 | 8338547 | 8338549 |
| chr_3 | g1128 | g1128.t8 | exon | g1128.t8.exon7 | 8340116 | 8340356 |
| chr_3 | g1128 | g1128.t8 | TSS | g1128.t8 | 8340439 | 8340439 |
Sequences
>g1128.t8 Gene=g1128 Length=1324
GGTGAGTAAGAACAAAGGTGTTAATGAAAAATTCAAACAATTACCTGTTTGCCTATGTTT
CTTATCATGCATTCATTTATTCACTGACTAAATATTGTTGTTTATACTTTTTTTGGGAAA
ATCCATGTATTCTCCGAATAATTTAAATATATGTGACGTATTGTATATTTCTTTAATAAT
TCATTAATATTTTTAAGTTTTTACACATGCATGTATTAGTAATAAAATTGATGAAAAATA
ATTTTTTTTAACTTGAAAATGCTCAAAAGCTTTTCCAAAAGCATTTCAAAAAAAAAAAAA
CGCTAAAAATTAAATTTCAAATTTTTGAAAATTTTGCTGTTCTGAAAATATTTTTGTACA
TAATTTAGCGAGAGAAAATTTCTGAAATTAAAGAAAAATGAACGACAAATTTAAGTTTTT
TTTGTCATTTAATCAATCCAAGTTGGGATTAGGAAAATTTGGAAATTTTAAAAACGATTA
TGGACTTTGGTTTATTCGTACTAATGGAAATCCTCAATCATTCACTGGTACAATAGGTCT
TGATCCTGCTTTTGACAAAAATTTAGTTGATTGGAAGCAAATTGAAATTAATGTAAGATT
GATTAAAAGTGCATTCAATCGTCACTCGGATACAATTGCCTCTGTAACTGCCCGTTATCT
GGAAAAAAATATCTTTAAGTTCGGATTAACTAAATCAATGACAGGTGACTTGACTCAAAT
AAATTTTTCTTGTATTGTCGAGATCAATATGCCAATCATTTTAAACAATAAAAAAAATAG
CAAACGTGATGGTGCAAAAAATCATTTAAAGTCTATGTTTGAATCAGGAAATGATGCTGA
TATCACAATTATGTCAGAAGGAAAAGAGCTCAAAGTTCATAATTTCATTTTAAAACGATC
AGAAGTTTTTTCGAAAATGTTTAGTGGTGAAATGAAGGAATCTCGAAATAGAATCGTAGT
TATTGAAGACATCAAACACGAAGTGATTGTTGAAATGTGCCGATATTTATATTACGATGA
AATTCCTAAAATTAAATCACTTGCTCTTCCTTTATTAGTTGCTGCTTCAAAATATTTAAT
CGATGATTTAGTTGAAGAATGTGAAGATTTTTTGATGACAAACATTACTCTTGACAATTA
TCATGAGGTTATAGTAATTGCTGATCAACTTAATAAGGAAAAGTTGCGAGAAGCTGCTAT
TGATTATATTATTACCAATTGTAAATCAATTTTCCCGTCTACTGCTTGGAAGGAATTAAA
AACTAGTCACGTGCAACTTGCATTGACTGTCATGGAAAAATTTATGTTAACTTTTCAACT
ATGA
>g1128.t8 Gene=g1128 Length=308
MNDKFKFFLSFNQSKLGLGKFGNFKNDYGLWFIRTNGNPQSFTGTIGLDPAFDKNLVDWK
QIEINVRLIKSAFNRHSDTIASVTARYLEKNIFKFGLTKSMTGDLTQINFSCIVEINMPI
ILNNKKNSKRDGAKNHLKSMFESGNDADITIMSEGKELKVHNFILKRSEVFSKMFSGEMK
ESRNRIVVIEDIKHEVIVEMCRYLYYDEIPKIKSLALPLLVAASKYLIDDLVEECEDFLM
TNITLDNYHEVIVIADQLNKEKLREAAIDYIITNCKSIFPSTAWKELKTSHVQLALTVME
KFMLTFQL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g1128.t8 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 125 | 237 | 0.00 |
| 6 | g1128.t8 | Gene3D | G3DSA:1.25.40.420 | - | 242 | 306 | 0.00 |
| 2 | g1128.t8 | PANTHER | PTHR24413:SF213 | FI01029P-RELATED | 107 | 302 | 0.00 |
| 3 | g1128.t8 | PANTHER | PTHR24413 | SPECKLE-TYPE POZ PROTEIN | 107 | 302 | 0.00 |
| 1 | g1128.t8 | Pfam | PF00651 | BTB/POZ domain | 137 | 241 | 0.00 |
| 8 | g1128.t8 | ProSiteProfiles | PS50097 | BTB domain profile. | 147 | 213 | 13.86 |
| 5 | g1128.t8 | SMART | SM00225 | BTB_4 | 147 | 243 | 0.00 |
| 4 | g1128.t8 | SUPERFAMILY | SSF54695 | POZ domain | 133 | 241 | 0.00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed