Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11304 g11304.t14 TTS g11304.t14 15503334 15503334
chr_1 g11304 g11304.t14 isoform g11304.t14 15504126 15506200
chr_1 g11304 g11304.t14 exon g11304.t14.exon1 15504126 15504567
chr_1 g11304 g11304.t14 cds g11304.t14.CDS1 15504127 15504567
chr_1 g11304 g11304.t14 exon g11304.t14.exon2 15504625 15505001
chr_1 g11304 g11304.t14 cds g11304.t14.CDS2 15504625 15504840
chr_1 g11304 g11304.t14 exon g11304.t14.exon3 15506066 15506091
chr_1 g11304 g11304.t14 exon g11304.t14.exon4 15506147 15506200
chr_1 g11304 g11304.t14 TSS g11304.t14 15506200 15506200

Sequences

>g11304.t14 Gene=g11304 Length=899
GATTGAGTGTACCGATTATTCTGTGTGAATTGTAATTTTTATTTTAAATTAATTTTATGG
AAATATAGAAGCAAGTAAAAATTCCAAACAGGCAGAGAAAAAGTATAGTTTGCTCGATTT
ATTTCTTATTTGTCTATTTTTTTTTGTAACTAACGAAGAAATTACACACAAAACAAGTAA
AAGTGTCATCGTCGTCCTCGTGTTGCCTTTATTATCATTTTAGTTTACAAGAGCATGTAA
AATGGATCTGCAGGTTTATGCAATTATTTTGATCGTATTTTTGGTGTCATTTTTGTCATA
TTTGTTCATATCAAGATTCTTGCCACATGGTAAGACATTTGATGAAATGATTGCTGAGAA
GAAAAGAATGCGTGAGGAAGTTCTTGGAACATTGAAATCATCAAGTGGAAAGCAAAATAA
TGCAACAAAAAAGAAACCCAAAAAAGAAATAAAAAAGAAGGAGGTTCAATTGAAAGTTGT
TAAAGAAGTAACAAGCAATGAGTCAGATGTGTCTGAAGAATCTGAAGTAAATCGATCAGA
ACCTGCAACTCCACCAGAAATTCCACGTAAGCAGCAGGTGACTAACAAGACGCAAGTTAG
TAGTCATAACAAGAAAGGTAATGGAAAAGGAAAGAGTGGTATATTGGTAAATAAGAATGA
ACCCTTAATGGTCAAGGAACTTGAAGCTGTTGAAGAAAGCAATCATTTTGTTGAAATACA
TCCAAAAGATGCAATTGAGATTCATCGTGGAAAAGAAGAAGAGCAAAAGAGTACTAAGAA
TTTCAGAGAAAACAAAAAATCTCACAAACAGCAGCAATCACAGCAACAAGTTATTAAAGA
AACACCTCCGGTTTCTCCGAAAAAAATTCAATCAGTTAAAGAAGTCAAGGTGAACGATG

>g11304.t14 Gene=g11304 Length=219
MDLQVYAIILIVFLVSFLSYLFISRFLPHGKTFDEMIAEKKRMREEVLGTLKSSSGKQNN
ATKKKPKKEIKKKEVQLKVVKEVTSNESDVSEESEVNRSEPATPPEIPRKQQVTNKTQVS
SHNKKGNGKGKSGILVNKNEPLMVKELEAVEESNHFVEIHPKDAIEIHRGKEEEQKSTKN
FRENKKSHKQQQSQQQVIKETPPVSPKKIQSVKEVKVND

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g11304.t14 Coils Coil Coil 171 191 -
4 g11304.t14 MobiDBLite mobidb-lite consensus disorder prediction 49 137 -
5 g11304.t14 MobiDBLite mobidb-lite consensus disorder prediction 72 96 -
3 g11304.t14 MobiDBLite mobidb-lite consensus disorder prediction 108 127 -
2 g11304.t14 MobiDBLite mobidb-lite consensus disorder prediction 161 219 -
6 g11304.t14 MobiDBLite mobidb-lite consensus disorder prediction 161 189 -
9 g11304.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
10 g11304.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 23 -
8 g11304.t14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 24 219 -
1 g11304.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 5 27 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values