General information for g11306.t32
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11306 is located on chr_1: 15510949..15511635 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11306 | g11306.t32 | isoform | g11306.t32 | 15509306 | 15510065 |
| chr_1 | g11306 | g11306.t32 | exon | g11306.t32.exon1 | 15509306 | 15509511 |
| chr_1 | g11306 | g11306.t32 | cds | g11306.t32.CDS1 | 15509307 | 15509511 |
| chr_1 | g11306 | g11306.t32 | exon | g11306.t32.exon2 | 15509565 | 15509763 |
| chr_1 | g11306 | g11306.t32 | cds | g11306.t32.CDS2 | 15509565 | 15509763 |
| chr_1 | g11306 | g11306.t32 | exon | g11306.t32.exon3 | 15509825 | 15509901 |
| chr_1 | g11306 | g11306.t32 | cds | g11306.t32.CDS3 | 15509825 | 15509846 |
| chr_1 | g11306 | g11306.t32 | exon | g11306.t32.exon4 | 15510005 | 15510065 |
| chr_1 | g11306 | g11306.t32 | TSS | g11306.t32 | NA | NA |
| chr_1 | g11306 | g11306.t32 | TTS | g11306.t32 | NA | NA |
Sequences
>g11306.t32 Gene=g11306 Length=543
ACGCTGTATTTAATCAAAAATTACATCTAATCTATTTAATTAATGATTTACTACATCACT
GTGTCAAAAAGAATGCGGATGACTTGAAAAACTGCCTGGAGAGTGTCGTTATACCTATGT
TTTGCAACGCTACAATGAGTGCGAATGAGGAACAAAAGGATAAATTGAGTAAATTGCTTA
CACTTTGGGCATCCAAAGCGAATTTCTTTGACTCGTGTGCCATTTCAAAACTTCAGTCAC
CACCATCATCACTACAGGAATATCATAATTCTCTGTTAAGTCAATACTCAGCCGCTGTTA
CATCGCTAACTCAAGCTACTAAAAAGAAATTTGATGACTATCGACAACAACATCAAACTT
TTGTTGAACATGCAACCAAGCAAATTGCAATTTTAGAGACTCAAAAACAAGCGCTTGAAC
AGCAAAGTTTAAACTTAAAGCAGCAACCTATTCCTATTTCTTCGCAACAGCAAATGTTAT
CCCATGATTTATCCCAAAATTCTCAACCATCAATGATTCCATCAATTCTAAACAATGTTA
ATG
>g11306.t32 Gene=g11306 Length=142
MFCNATMSANEEQKDKLSKLLTLWASKANFFDSCAISKLQSPPSSLQEYHNSLLSQYSAA
VTSLTQATKKKFDDYRQQHQTFVEHATKQIAILETQKQALEQQSLNLKQQPIPISSQQQM
LSHDLSQNSQPSMIPSILNNVN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g11306.t32 | Coils | Coil | Coil | 83 | 110 | - |
| 3 | g11306.t32 | Gene3D | G3DSA:1.25.40.90 | - | 1 | 53 | 3.7E-5 |
| 2 | g11306.t32 | MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 142 | - |
| 1 | g11306.t32 | PANTHER | PTHR12323 | SR-RELATED CTD ASSOCIATED FACTOR 6 | 1 | 131 | 1.9E-19 |
| 5 | g11306.t32 | ProSiteProfiles | PS51391 | CID domain profile. | 1 | 47 | 10.739 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006874 | cellular calcium ion homeostasis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
