General information for g11318.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11318 is located on chr_1: 15601553..15602839 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11318 | g11318.t1 | TSS | g11318.t1 | 15601483 | 15601483 |
| chr_1 | g11318 | g11318.t1 | isoform | g11318.t1 | 15601553 | 15602839 |
| chr_1 | g11318 | g11318.t1 | exon | g11318.t1.exon1 | 15601553 | 15601893 |
| chr_1 | g11318 | g11318.t1 | cds | g11318.t1.CDS1 | 15601553 | 15601893 |
| chr_1 | g11318 | g11318.t1 | exon | g11318.t1.exon2 | 15602179 | 15602255 |
| chr_1 | g11318 | g11318.t1 | cds | g11318.t1.CDS2 | 15602179 | 15602255 |
| chr_1 | g11318 | g11318.t1 | exon | g11318.t1.exon3 | 15602486 | 15602544 |
| chr_1 | g11318 | g11318.t1 | cds | g11318.t1.CDS3 | 15602486 | 15602544 |
| chr_1 | g11318 | g11318.t1 | exon | g11318.t1.exon4 | 15602615 | 15602839 |
| chr_1 | g11318 | g11318.t1 | cds | g11318.t1.CDS4 | 15602615 | 15602839 |
| chr_1 | g11318 | g11318.t1 | TTS | g11318.t1 | NA | NA |
Sequences
>g11318.t1 Gene=g11318 Length=702
ATGTGTGAAGTTCAAGCATCTTTCAATATCGCTCTTCCAAAACCAAAAAATTCAACAACA
AATTTGATATTTCCAAATACATCACAGTCAAAACGAACAAAATCTGTACTGATGAGTTTT
GTTGATAATTTATGGTCGATGGAAATAAGTGGAGGAAGTGATCAAATGCAACCATTGACA
GTAATTTCTGTGAAAAAGAATGGATTAGCACGACGAGCAGGAATCAAAGTTGGCGATATA
ATAACACACATCAATGGTACTCCCGCGAACAACATGACTCTGCTTGATGCACAATTAGAA
ATTCAAGATTCAGGAAAAACTTTAAAGCTCACCGTGAAAGGTGATTCAGATGAGTCGACA
AGCAATAGCAGTGAAGAAGATGAAACCACAAATACTGTTGATTTTTGGTTCAAACCTATG
AAGCCAGAAGAACTCAATTTGCTTGAATGGCAGAAAAAGCGTGATGAGAAGAGGCGGATG
ACAAAGCAATTGTATCAAGAATTTCCATGGAATGATCGAAAAAAGCCTCTTTTAAGAACT
TCAAATTGTTTCATGGCAAGCGCATGCAATCGAGAGCGTGAAATTAAACTTAAGGCCTCA
AAGGAGCGATACATTGAAAGTGAAAGAAAAAGATTAATGGAAATAGAGGGGAAAATTCGT
GGCCATTTTATAAGTGAGTGGGAAAAGACACGCAAAACCTAA
>g11318.t1 Gene=g11318 Length=233
MCEVQASFNIALPKPKNSTTNLIFPNTSQSKRTKSVLMSFVDNLWSMEISGGSDQMQPLT
VISVKKNGLARRAGIKVGDIITHINGTPANNMTLLDAQLEIQDSGKTLKLTVKGDSDEST
SNSSEEDETTNTVDFWFKPMKPEELNLLEWQKKRDEKRRMTKQLYQEFPWNDRKKPLLRT
SNCFMASACNREREIKLKASKERYIESERKRLMEIEGKIRGHFISEWEKTRKT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g11318.t1 | CDD | cd00992 | PDZ_signaling | 45 | 113 | 4.68273E-17 |
| 5 | g11318.t1 | Gene3D | G3DSA:2.30.42.10 | - | 30 | 130 | 7.9E-19 |
| 8 | g11318.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 131 | - |
| 2 | g11318.t1 | PANTHER | PTHR24214 | PDZ AND LIM DOMAIN PROTEIN ZASP | 44 | 160 | 3.4E-14 |
| 3 | g11318.t1 | PANTHER | PTHR24214:SF56 | Z BAND ALTERNATIVELY SPLICED PDZ-MOTIF PROTEIN 67, ISOFORM G | 44 | 160 | 3.4E-14 |
| 1 | g11318.t1 | Pfam | PF00595 | PDZ domain | 45 | 113 | 8.2E-16 |
| 9 | g11318.t1 | ProSiteProfiles | PS50106 | PDZ domain profile. | 47 | 116 | 12.265 |
| 7 | g11318.t1 | SMART | SM00228 | pdz_new | 43 | 116 | 3.8E-13 |
| 4 | g11318.t1 | SUPERFAMILY | SSF50156 | PDZ domain-like | 45 | 118 | 2.5E-17 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed