General information for g11326.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Fatty acid-binding protein.
Parent gene
- The parent gene g11326 is located on chr_1: 15634082..15634788 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11326 | g11326.t1 | TSS | g11326.t1 | 15633980 | 15633980 |
| chr_1 | g11326 | g11326.t1 | isoform | g11326.t1 | 15634082 | 15634788 |
| chr_1 | g11326 | g11326.t1 | exon | g11326.t1.exon1 | 15634082 | 15634154 |
| chr_1 | g11326 | g11326.t1 | cds | g11326.t1.CDS1 | 15634082 | 15634154 |
| chr_1 | g11326 | g11326.t1 | exon | g11326.t1.exon2 | 15634460 | 15634788 |
| chr_1 | g11326 | g11326.t1 | cds | g11326.t1.CDS2 | 15634460 | 15634788 |
| chr_1 | g11326 | g11326.t1 | TTS | g11326.t1 | 15634844 | 15634844 |
Sequences
>g11326.t1 Gene=g11326 Length=402
ATGTCTATCGTATTCAACAAGAAGTATAAGCTTGACAGAAGCGAAAATTTTGATGAGTTT
TTGAAGGAACTTGGAGTTAATTATTTGATTAGAAAAATGGCGAATAGCACTACATCAACT
GTTGAGCTAGTTAAATTAGATGACGAAACATATAGTTTTAACACAACATCCACATTCCGC
TCTCAAGAGCTTAAGTTTAAATTGAATGAGGAATTTACAGAAAAACGAATGGACGGTGCA
GAAGTAAAATCCACAATAACTTTCGAAGGAAACAAGATGATTCAAAGACAAAAGGGAGAC
AAAGAGATTGTTCTTGAACGCGTGTTCACTCAGGACGAACTTATCTTGACTTGCACTGTT
AACAATGTGGTTGCTAAACGTTGGTTTAAGGCTGTAACATAA
>g11326.t1 Gene=g11326 Length=133
MSIVFNKKYKLDRSENFDEFLKELGVNYLIRKMANSTTSTVELVKLDDETYSFNTTSTFR
SQELKFKLNEEFTEKRMDGAEVKSTITFEGNKMIQRQKGDKEIVLERVFTQDELILTCTV
NNVVAKRWFKAVT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g11326.t1 | Gene3D | G3DSA:2.40.128.20 | - | 4 | 131 | 1.5E-46 |
| 2 | g11326.t1 | PANTHER | PTHR11955:SF135 | FATTY ACID BINDING PROTEIN, ISOFORM C | 5 | 130 | 5.0E-35 |
| 3 | g11326.t1 | PANTHER | PTHR11955 | FATTY ACID BINDING PROTEIN | 5 | 130 | 5.0E-35 |
| 6 | g11326.t1 | PRINTS | PR00178 | Fatty acid-binding protein signature | 5 | 27 | 5.6E-17 |
| 5 | g11326.t1 | PRINTS | PR00178 | Fatty acid-binding protein signature | 65 | 81 | 5.6E-17 |
| 4 | g11326.t1 | PRINTS | PR00178 | Fatty acid-binding protein signature | 111 | 131 | 5.6E-17 |
| 1 | g11326.t1 | Pfam | PF00061 | Lipocalin / cytosolic fatty-acid binding protein family | 8 | 126 | 3.1E-13 |
| 8 | g11326.t1 | ProSitePatterns | PS00214 | Cytosolic fatty-acid binding proteins signature. | 7 | 24 | - |
| 7 | g11326.t1 | SUPERFAMILY | SSF50814 | Lipocalins | 5 | 130 | 1.66E-37 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008289 | lipid binding | MF |
KEGG
Orthology
- This transcript has been annotated with K08753 (fatty acid-binding protein 4, adipocyte)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
