General information for g11326.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11326 is located on chr_1: 15634082..15634788 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11326 | g11326.t2 | TSS | g11326.t2 | 15633980 | 15633980 |
| chr_1 | g11326 | g11326.t2 | isoform | g11326.t2 | 15634082 | 15634788 |
| chr_1 | g11326 | g11326.t2 | exon | g11326.t2.exon1 | 15634082 | 15634104 |
| chr_1 | g11326 | g11326.t2 | exon | g11326.t2.exon2 | 15634460 | 15634788 |
| chr_1 | g11326 | g11326.t2 | cds | g11326.t2.CDS1 | 15634483 | 15634788 |
| chr_1 | g11326 | g11326.t2 | TTS | g11326.t2 | 15634844 | 15634844 |
Sequences
>g11326.t2 Gene=g11326 Length=352
ATGTCTATCGTATTCAACAAGAAGAGTTAATTATTTGATTAGAAAAATGGCGAATAGCAC
TACATCAACTGTTGAGCTAGTTAAATTAGATGACGAAACATATAGTTTTAACACAACATC
CACATTCCGCTCTCAAGAGCTTAAGTTTAAATTGAATGAGGAATTTACAGAAAAACGAAT
GGACGGTGCAGAAGTAAAATCCACAATAACTTTCGAAGGAAACAAGATGATTCAAAGACA
AAAGGGAGACAAAGAGATTGTTCTTGAACGCGTGTTCACTCAGGACGAACTTATCTTGAC
TTGCACTGTTAACAATGTGGTTGCTAAACGTTGGTTTAAGGCTGTAACATAA
>g11326.t2 Gene=g11326 Length=101
MANSTTSTVELVKLDDETYSFNTTSTFRSQELKFKLNEEFTEKRMDGAEVKSTITFEGNK
MIQRQKGDKEIVLERVFTQDELILTCTVNNVVAKRWFKAVT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g11326.t2 | Gene3D | G3DSA:2.40.128.20 | - | 1 | 99 | 0e+00 |
| 2 | g11326.t2 | PANTHER | PTHR11955:SF135 | FATTY ACID BINDING PROTEIN, ISOFORM C | 1 | 98 | 0e+00 |
| 3 | g11326.t2 | PANTHER | PTHR11955 | FATTY ACID BINDING PROTEIN | 1 | 98 | 0e+00 |
| 5 | g11326.t2 | PRINTS | PR00178 | Fatty acid-binding protein signature | 33 | 49 | 1e-07 |
| 4 | g11326.t2 | PRINTS | PR00178 | Fatty acid-binding protein signature | 79 | 99 | 1e-07 |
| 1 | g11326.t2 | Pfam | PF00061 | Lipocalin / cytosolic fatty-acid binding protein family | 2 | 94 | 1e-06 |
| 6 | g11326.t2 | SUPERFAMILY | SSF50814 | Lipocalins | 11 | 98 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008289 | lipid binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
