General information for g11342.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein arginine methyltransferase NDUFAF7 homolog, mitochondrial.
Parent gene
- The parent gene g11342 is located on chr_1: 15730891..15732328 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11342 | g11342.t1 | TTS | g11342.t1 | 15730785 | 15730785 |
| chr_1 | g11342 | g11342.t1 | isoform | g11342.t1 | 15730891 | 15732328 |
| chr_1 | g11342 | g11342.t1 | exon | g11342.t1.exon1 | 15730891 | 15731241 |
| chr_1 | g11342 | g11342.t1 | cds | g11342.t1.CDS1 | 15730891 | 15731241 |
| chr_1 | g11342 | g11342.t1 | exon | g11342.t1.exon2 | 15731304 | 15732070 |
| chr_1 | g11342 | g11342.t1 | cds | g11342.t1.CDS2 | 15731304 | 15732070 |
| chr_1 | g11342 | g11342.t1 | exon | g11342.t1.exon3 | 15732133 | 15732328 |
| chr_1 | g11342 | g11342.t1 | cds | g11342.t1.CDS3 | 15732133 | 15732328 |
| chr_1 | g11342 | g11342.t1 | TSS | g11342.t1 | 15732358 | 15732358 |
Sequences
>g11342.t1 Gene=g11342 Length=1314
ATGTTTTTATTAAAATTTGATCGATTTTCAAGAAATATTTTGTCATCTCAACATATAAGA
TGTTTTTGTTACAAAGCAATAAAGAGACCCAACTTGAATAAAGCACCAGACAAAGAGTAT
ATAGAGAAGAAAATGAAGGAATATGATTTACCGAAACTACTCCAAAGAAAAATTCAAGTT
TCAGGACCAATCACAATTGCATCATATATGAGAGAGATTTTAACAAATCCTAATAGTGGA
TATTATATGTGTAGAGATGTTTTTGGTTCAAAAGGAGATTTTATTACTTCACCTGAAATA
AGTCAGATATTTGCTGAACTCGTAGCAGCATGGTGCATAGTTGAATATCAAAAAGTGGGA
ATGCCAAAGCCTCTTCAAATTATTGAACTGGGCCCAGGAAGAGGAACGTTTATTCAAGAT
ATTCTTCGTGTTTGTAGCAAATTAAGAATTGTTCCTTCTGATTCTCTTTCAATACACTTA
GTTGAACTTAGTCCATATTTGAGCAAAATGCAAGCTCAAAAGTTGTGCTATTCTTCAACA
GAGTTCGAAAAACAAAATGATTTACCATTTTATCGAATTGGCGAAACTGTTTCAGGTAGC
AAAGTTTATTGGTATAATAGAATTGAAGATGTACCTAAAGAATTTTCAATTATTCTTGCT
CATGAGTTTTTCGATGCTCTGCCAATACATAAATTACAAAAAGATGGAAATATTTGGAAA
GAAATTTTAGTTGATATTGATCCAGAGAATGAAGAAAAATTCAGATTTGTTATATCAAGA
AACGAGACACCCATCTCCAAACTTTATGGAACATTACACCCAGATGAGACAAGAAAACAT
GTAGAGATTTCGCCTGATTCAGAATTAATTTTAAAACACATTGCTGAAAGGCTAGAAGAA
TTTGGTGGATTCGGCTTAATTATGGACTATGGTCATTTTGGTGAAGGAGAAGATACCTTT
AGAGCATTTAAAGAACATAATTTACATGATCCATTAGATAATCCTGGTACAGCTGATTTA
ACTGCTGATGTCAATTTTGCAAATTTAAAAAAAATATTAGAAACTGATGAAAAACTCATA
ACTTTTGGTCCTGTAGAGCAAGGTATATTTTTAGAACGAATGGGAGCTAATGAGAGACTT
GATATATTACTCAAATCTTGTGAACAAGATCAAAAAGAAACGTTGAAATCTGGTCTTGAT
ATGTTAGTAAATAGAAGTAAAATGGGTTCTCGATTTAAATTCTTAAGCATGTTTCCTAAT
GTATTAAAAGCTTATTTAGAAAAATTTCCAGTACATGGTTTTAGTGAGAAATAA
>g11342.t1 Gene=g11342 Length=437
MFLLKFDRFSRNILSSQHIRCFCYKAIKRPNLNKAPDKEYIEKKMKEYDLPKLLQRKIQV
SGPITIASYMREILTNPNSGYYMCRDVFGSKGDFITSPEISQIFAELVAAWCIVEYQKVG
MPKPLQIIELGPGRGTFIQDILRVCSKLRIVPSDSLSIHLVELSPYLSKMQAQKLCYSST
EFEKQNDLPFYRIGETVSGSKVYWYNRIEDVPKEFSIILAHEFFDALPIHKLQKDGNIWK
EILVDIDPENEEKFRFVISRNETPISKLYGTLHPDETRKHVEISPDSELILKHIAERLEE
FGGFGLIMDYGHFGEGEDTFRAFKEHNLHDPLDNPGTADLTADVNFANLKKILETDEKLI
TFGPVEQGIFLERMGANERLDILLKSCEQDQKETLKSGLDMLVNRSKMGSRFKFLSMFPN
VLKAYLEKFPVHGFSEK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g11342.t1 | Gene3D | G3DSA:3.40.50.12710 | - | 36 | 433 | 0 |
| 2 | g11342.t1 | PANTHER | PTHR12049 | UNCHARACTERIZED | 38 | 420 | 0 |
| 3 | g11342.t1 | PANTHER | PTHR12049:SF7 | PROTEIN ARGININE METHYLTRANSFERASE NDUFAF7, MITOCHONDRIAL | 38 | 420 | 0 |
| 1 | g11342.t1 | Pfam | PF02636 | Putative S-adenosyl-L-methionine-dependent methyltransferase | 107 | 364 | 0 |
| 4 | g11342.t1 | SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 50 | 423 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K18164 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 7)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
