General information for g11342.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein arginine methyltransferase NDUFAF7 homolog, mitochondrial.
Parent gene
- The parent gene g11342 is located on chr_1: 15730891..15732328 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11342 | g11342.t4 | TTS | g11342.t4 | 15730785 | 15730785 |
| chr_1 | g11342 | g11342.t4 | isoform | g11342.t4 | 15730891 | 15731577 |
| chr_1 | g11342 | g11342.t4 | exon | g11342.t4.exon1 | 15730891 | 15731241 |
| chr_1 | g11342 | g11342.t4 | cds | g11342.t4.CDS1 | 15730891 | 15731241 |
| chr_1 | g11342 | g11342.t4 | exon | g11342.t4.exon2 | 15731304 | 15731577 |
| chr_1 | g11342 | g11342.t4 | cds | g11342.t4.CDS2 | 15731304 | 15731345 |
| chr_1 | g11342 | g11342.t4 | TSS | g11342.t4 | 15732358 | 15732358 |
Sequences
>g11342.t4 Gene=g11342 Length=625
TAAATTACAAAAAGATGGAAATATTTGGAAAGAAATTTTAGTTGATATTGATCCAGAGAA
TGAAGAAAAATTCAGATTTGTTATATCAAGAAACGAGACACCCATCTCCAAACTTTATGG
AACATTACACCCAGATGAGACAAGAAAACATGTAGAGATTTCGCCTGATTCAGAATTAAT
TTTAAAACACATTGCTGAAAGGCTAGAAGAATTTGGTGGATTCGGCTTAATTATGGACTA
TGGTCATTTTGGTGAAGGAGAAGATACCTTTAGAGCATTTAAAGAACATAATTTACATGA
TCCATTAGATAATCCTGGTACAGCTGATTTAACTGCTGATGTCAATTTTGCAAATTTAAA
AAAAATATTAGAAACTGATGAAAAACTCATAACTTTTGGTCCTGTAGAGCAAGGTATATT
TTTAGAACGAATGGGAGCTAATGAGAGACTTGATATATTACTCAAATCTTGTGAACAAGA
TCAAAAAGAAACGTTGAAATCTGGTCTTGATATGTTAGTAAATAGAAGTAAAATGGGTTC
TCGATTTAAATTCTTAAGCATGTTTCCTAATGTATTAAAAGCTTATTTAGAAAAATTTCC
AGTACATGGTTTTAGTGAGAAATAA
>g11342.t4 Gene=g11342 Length=130
MDYGHFGEGEDTFRAFKEHNLHDPLDNPGTADLTADVNFANLKKILETDEKLITFGPVEQ
GIFLERMGANERLDILLKSCEQDQKETLKSGLDMLVNRSKMGSRFKFLSMFPNVLKAYLE
KFPVHGFSEK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g11342.t4 | Gene3D | G3DSA:3.40.50.12710 | - | 1 | 127 | 0 |
| 2 | g11342.t4 | PANTHER | PTHR12049 | UNCHARACTERIZED | 1 | 113 | 0 |
| 3 | g11342.t4 | PANTHER | PTHR12049:SF7 | PROTEIN ARGININE METHYLTRANSFERASE NDUFAF7, MITOCHONDRIAL | 1 | 113 | 0 |
| 1 | g11342.t4 | Pfam | PF02636 | Putative S-adenosyl-L-methionine-dependent methyltransferase | 1 | 57 | 0 |
| 4 | g11342.t4 | SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 2 | 117 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
