Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Dynein beta chain, ciliary.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11348 g11348.t1 isoform g11348.t1 15744146 15745268
chr_1 g11348 g11348.t1 exon g11348.t1.exon1 15744146 15744389
chr_1 g11348 g11348.t1 cds g11348.t1.CDS1 15744146 15744389
chr_1 g11348 g11348.t1 exon g11348.t1.exon2 15744453 15744624
chr_1 g11348 g11348.t1 cds g11348.t1.CDS2 15744453 15744624
chr_1 g11348 g11348.t1 exon g11348.t1.exon3 15744681 15744735
chr_1 g11348 g11348.t1 cds g11348.t1.CDS3 15744681 15744735
chr_1 g11348 g11348.t1 exon g11348.t1.exon4 15744792 15744960
chr_1 g11348 g11348.t1 cds g11348.t1.CDS4 15744792 15744960
chr_1 g11348 g11348.t1 exon g11348.t1.exon5 15745021 15745083
chr_1 g11348 g11348.t1 cds g11348.t1.CDS5 15745021 15745083
chr_1 g11348 g11348.t1 exon g11348.t1.exon6 15745141 15745268
chr_1 g11348 g11348.t1 cds g11348.t1.CDS6 15745141 15745268
chr_1 g11348 g11348.t1 TSS g11348.t1 NA NA
chr_1 g11348 g11348.t1 TTS g11348.t1 NA NA

Sequences

>g11348.t1 Gene=g11348 Length=831
ATGGAGTCTTCATCAAATCATGAAGGACCTGACTTACGACTTGATTTTATGGGCTCTTTC
ATACAGAAAACGCTCAAATTGAAAGTCGAGAAATGGCAGAGATTGTTAACATTTGAAGAA
CACAGAACTGTCATTAAAGATTTTTTAGATATACCAACCGAAATGGTGTTAGTTATTCAA
TTCACTCAATCTGCTCAACTTCTTCCAACAACCACATTTCCATTGACCCAACTGAAATCA
AAAGGTGTCTATTTTGTCAAACGTCTTCCTATTGAAATTCCAAGAGAAGATTGTGGTTAT
TGGTTAGTGAGCGGTGATTTAGCAACACGAAGTATAGACCAATTATCATGCCTTGTAGAT
GAAATTTTTGTTCCACTTTTATCTAATACTGATAATCATAAGGGTTGGCCAGAAATTGTT
GCACAAGATGTCATGAAAAGCACACATAGTTTAAAGAGCACTGTATATCAGGTTCAAGGA
CAAGTGAGTGGAAGAACAATTCTTCCGATGCCAGTTGGTGTAGAAAAATGTGTTACGACT
GCACGTGAACTGCAAGAAAATGCTGCAGAGTGTACAGTTGATTTGTATCTGAAATCAGCT
ATAGAAGGCGTCGTTATAAAATGGGTTACGCAGATCAATGATGTTTTCATGGAGAGCTCA
TCGAGCGCATTTAACAACGGTCAAAATCCAACTCCTGCTGTCGATGTTTCAAATTTTGCA
TGCAAATTTGTTGCTTTATTTCTCTCGAAAAGGCATTTTTTTACTGATTATAATTACAAA
GCAAATTATCAATGCATAAAAATAATAGAACCGAACAAAACTCATAACTAA

>g11348.t1 Gene=g11348 Length=276
MESSSNHEGPDLRLDFMGSFIQKTLKLKVEKWQRLLTFEEHRTVIKDFLDIPTEMVLVIQ
FTQSAQLLPTTTFPLTQLKSKGVYFVKRLPIEIPREDCGYWLVSGDLATRSIDQLSCLVD
EIFVPLLSNTDNHKGWPEIVAQDVMKSTHSLKSTVYQVQGQVSGRTILPMPVGVEKCVTT
ARELQENAAECTVDLYLKSAIEGVVIKWVTQINDVFMESSSSAFNNGQNPTPAVDVSNFA
CKFVALFLSKRHFFTDYNYKANYQCIKIIEPNKTHN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g11348.t1 PANTHER PTHR10676:SF374 DYNEIN HEAVY CHAIN AT 93AB, ISOFORM C 47 240 0
g11348.t1 PANTHER PTHR10676 DYNEIN HEAVY CHAIN FAMILY PROTEIN 47 240 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0007018 microtubule-based movement BP
GO:0008569 minus-end-directed microtubule motor activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed