General information for g11349.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Kinesin light chain.
Parent gene
- The parent gene g11349 is located on chr_1: 15748279..15750291 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11349 | g11349.t3 | isoform | g11349.t3 | 15748212 | 15750291 |
| chr_1 | g11349 | g11349.t3 | exon | g11349.t3.exon1 | 15748212 | 15748217 |
| chr_1 | g11349 | g11349.t3 | cds | g11349.t3.CDS1 | 15748212 | 15748217 |
| chr_1 | g11349 | g11349.t3 | exon | g11349.t3.exon2 | 15748277 | 15749068 |
| chr_1 | g11349 | g11349.t3 | cds | g11349.t3.CDS2 | 15748277 | 15749068 |
| chr_1 | g11349 | g11349.t3 | exon | g11349.t3.exon3 | 15749182 | 15749392 |
| chr_1 | g11349 | g11349.t3 | cds | g11349.t3.CDS3 | 15749182 | 15749367 |
| chr_1 | g11349 | g11349.t3 | exon | g11349.t3.exon4 | 15750259 | 15750291 |
| chr_1 | g11349 | g11349.t3 | TSS | g11349.t3 | 15750419 | 15750419 |
| chr_1 | g11349 | g11349.t3 | TTS | g11349.t3 | NA | NA |
Sequences
>g11349.t3 Gene=g11349 Length=1042
ACACGTGTAAAGTGAGTGCCGATTTTGTGATTTGAAGAAAATTGAAAATATTGGCAAAAT
GACACAAATGACCCAAGAAGAAATTGTCACAAACACAAAGACGGTCTTGCAGGGACTTGA
AGCACTACGACATGAACACATGTCAATTATGTCTGGTCTCACTGAAGGCAAAAAAGATCC
AGACAAAGTAGACATTATCCAAAAAAATATTGAAAACATTGAATTGGGTTTAGGTGAAGC
TCAGGTCATTGTAGTGTTAGCGTCACATTTACAAAATATTGAAGCCGAAAAACAGAAATT
ACGGACACAAGTTCGGCGTCTGTGTCAAGAAAATGCATGGCTTCGAGATGAATTAGCAAA
TACACAACAAAAATTGCAAACATCAGAGCAAATGGTGGCACAACTTGAAGAAGAGAAAAA
ACATCTTGATTTTATGCAATCTGTACGCAAATATGATGAAAATCAAGACGAGATTAATGA
AAATGAAAAGTCACGTACTGATCCAGTCGTTGAATTGTTTCCTGAAGATGAACAAGAAGA
TCGCAACAATATGTCGCCTACACCACCAAGTCAATTTGCAAATCAAGCTAATGCCGGTTA
TGAAATTCCAGCTCGTCTTAGAACACTTCATAATCTCGTTATTCAATATGCATCGCAAGG
GCGTTATGAGGTAGCAGTACCATTGTGCAAACAAGCACTTGAAGATCTTGAAAAAACTAG
TGGACATGATCATCCAGATGTGGCAACAATGCTCAACATTCTCGCATTAGTTTATCGTGA
TCAAAACAAATATAAGGAAGCAGCCAATTTATTAAATGATGCTCTTACAATTCGAGAGAA
AACGCTTGGCGAAAATCATCCAGCAGTTGCTGCAACTCTTAATAATTTGGCTGTCTTATA
TGGAAAGCGTGGCAAATATAAAGATGCAGAGCCACTATGCAAACGTGCATTAGAAATTCG
AGAAAAAGTTCTTGGCAAAGATCATCCAGATGTTGCAAAGCAATTAAATAATTTGGCATT
ATTGTGTCAAAATCAAGGAAAA
>g11349.t3 Gene=g11349 Length=328
MTQMTQEEIVTNTKTVLQGLEALRHEHMSIMSGLTEGKKDPDKVDIIQKNIENIELGLGE
AQVIVVLASHLQNIEAEKQKLRTQVRRLCQENAWLRDELANTQQKLQTSEQMVAQLEEEK
KHLDFMQSVRKYDENQDEINENEKSRTDPVVELFPEDEQEDRNNMSPTPPSQFANQANAG
YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR
DQNKYKEAANLLNDALTIREKTLGENHPAVAATLNNLAVLYGKRGKYKDAEPLCKRALEI
REKVLGKDHPDVAKQLNNLALLCQNQGK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g11349.t3 | Coils | Coil | Coil | 64 | 119 | - |
| 11 | g11349.t3 | Gene3D | G3DSA:1.25.40.10 | - | 170 | 328 | 3.5E-80 |
| 3 | g11349.t3 | PANTHER | PTHR45783 | KINESIN LIGHT CHAIN | 3 | 328 | 2.5E-162 |
| 4 | g11349.t3 | PANTHER | PTHR45783:SF7 | KINESIN LIGHT CHAIN 1 | 3 | 328 | 2.5E-162 |
| 6 | g11349.t3 | PRINTS | PR00381 | Kinesin light chain signature | 83 | 100 | 3.2E-55 |
| 9 | g11349.t3 | PRINTS | PR00381 | Kinesin light chain signature | 180 | 199 | 3.2E-55 |
| 8 | g11349.t3 | PRINTS | PR00381 | Kinesin light chain signature | 202 | 220 | 3.2E-55 |
| 7 | g11349.t3 | PRINTS | PR00381 | Kinesin light chain signature | 267 | 284 | 3.2E-55 |
| 5 | g11349.t3 | PRINTS | PR00381 | Kinesin light chain signature | 311 | 328 | 3.2E-55 |
| 1 | g11349.t3 | Pfam | PF13424 | Tetratricopeptide repeat | 187 | 261 | 2.4E-17 |
| 2 | g11349.t3 | Pfam | PF13374 | Tetratricopeptide repeat | 270 | 311 | 1.6E-15 |
| 13 | g11349.t3 | ProSitePatterns | PS01160 | Kinesin light chain repeat. | 254 | 295 | - |
| 18 | g11349.t3 | ProSiteProfiles | PS50005 | TPR repeat profile. | 187 | 220 | 5.281 |
| 19 | g11349.t3 | ProSiteProfiles | PS50293 | TPR repeat region circular profile. | 187 | 304 | 13.875 |
| 17 | g11349.t3 | ProSiteProfiles | PS50005 | TPR repeat profile. | 229 | 262 | 8.378 |
| 16 | g11349.t3 | ProSiteProfiles | PS50005 | TPR repeat profile. | 271 | 304 | 7.906 |
| 15 | g11349.t3 | SMART | SM00028 | tpr_5 | 229 | 262 | 0.24 |
| 14 | g11349.t3 | SMART | SM00028 | tpr_5 | 271 | 304 | 3.2E-5 |
| 10 | g11349.t3 | SUPERFAMILY | SSF48452 | TPR-like | 187 | 328 | 1.98E-27 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
| GO:0005871 | kinesin complex | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
