Gene loci information

Transcript annotation

  • This transcript has been annotated as Kinesin light chain.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11349 g11349.t5 isoform g11349.t5 15748276 15750291
chr_1 g11349 g11349.t5 exon g11349.t5.exon1 15748276 15749058
chr_1 g11349 g11349.t5 cds g11349.t5.CDS1 15748277 15748921
chr_1 g11349 g11349.t5 exon g11349.t5.exon2 15749182 15749392
chr_1 g11349 g11349.t5 exon g11349.t5.exon3 15750259 15750291
chr_1 g11349 g11349.t5 TSS g11349.t5 15750419 15750419
chr_1 g11349 g11349.t5 TTS g11349.t5 NA NA

Sequences

>g11349.t5 Gene=g11349 Length=1027
ACACGTGTAAAGTGAGTGCCGATTTTGTGATTTGAAGAAAATTGAAAATATTGGCAAAAT
GACACAAATGACCCAAGAAGAAATTGTCACAAACACAAAGACGGTCTTGCAGGGACTTGA
AGCACTACGACATGAACACATGTCAATTATGTCTGGTCTCACTGAAGGCAAAAAAGATCC
AGACAAAGTAGACATTATCCAAAAAAATATTGAAAACATTGAATTGGGTTTAGGTGAAGC
TCAGTGTTAGCGTCACATTTACAAAATATTGAAGCCGAAAAACAGAAATTACGGACACAA
GTTCGGCGTCTGTGTCAAGAAAATGCATGGCTTCGAGATGAATTAGCAAATACACAACAA
AAATTGCAAACATCAGAGCAAATGGTGGCACAACTTGAAGAAGAGAAAAAACATCTTGAT
TTTATGCAATCTGTACGCAAATATGATGAAAATCAAGACGAGATTAATGAAAATGAAAAG
TCACGTACTGATCCAGTCGTTGAATTGTTTCCTGAAGATGAACAAGAAGATCGCAACAAT
ATGTCGCCTACACCACCAAGTCAATTTGCAAATCAAGCTAATGCCGGTTATGAAATTCCA
GCTCGTCTTAGAACACTTCATAATCTCGTTATTCAATATGCATCGCAAGGGCGTTATGAG
GTAGCAGTACCATTGTGCAAACAAGCACTTGAAGATCTTGAAAAAACTAGTGGACATGAT
CATCCAGATGTGGCAACAATGCTCAACATTCTCGCATTAGTTTATCGTGATCAAAACAAA
TATAAGGAAGCAGCCAATTTATTAAATGATGCTCTTACAATTCGAGAGAAAACGCTTGGC
GAAAATCATCCAGCAGTTGCTGCAACTCTTAATAATTTGGCTGTCTTATATGGAAAGCGT
GGCAAATATAAAGATGCAGAGCCACTATGCAAACGTGCATTAGAAATTCGAGAAAAAGTT
CTTGGCAAAGATCATCCAGATGTTGCAAAGCAATTAAATAATTTGGCATTATTGTGTCAA
AATCAAG

>g11349.t5 Gene=g11349 Length=215
MVAQLEEEKKHLDFMQSVRKYDENQDEINENEKSRTDPVVELFPEDEQEDRNNMSPTPPS
QFANQANAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATM
LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHPAVAATLNNLAVLYGKRGKYKDAE
PLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g11349.t5 Gene3D G3DSA:1.25.40.10 - 59 215 3.8E-79
14 g11349.t5 MobiDBLite mobidb-lite consensus disorder prediction 16 59 -
15 g11349.t5 MobiDBLite mobidb-lite consensus disorder prediction 16 52 -
3 g11349.t5 PANTHER PTHR45783 KINESIN LIGHT CHAIN 2 215 2.1E-115
4 g11349.t5 PANTHER PTHR45783:SF7 KINESIN LIGHT CHAIN 1 2 215 2.1E-115
5 g11349.t5 PRINTS PR00381 Kinesin light chain signature 69 88 1.9E-44
7 g11349.t5 PRINTS PR00381 Kinesin light chain signature 91 109 1.9E-44
8 g11349.t5 PRINTS PR00381 Kinesin light chain signature 156 173 1.9E-44
6 g11349.t5 PRINTS PR00381 Kinesin light chain signature 200 215 1.9E-44
1 g11349.t5 Pfam PF13424 Tetratricopeptide repeat 76 150 1.1E-17
2 g11349.t5 Pfam PF13374 Tetratricopeptide repeat 159 200 8.4E-16
11 g11349.t5 ProSitePatterns PS01160 Kinesin light chain repeat. 143 184 -
16 g11349.t5 ProSiteProfiles PS50005 TPR repeat profile. 76 109 5.281
19 g11349.t5 ProSiteProfiles PS50293 TPR repeat region circular profile. 76 193 13.875
17 g11349.t5 ProSiteProfiles PS50005 TPR repeat profile. 118 151 8.378
18 g11349.t5 ProSiteProfiles PS50005 TPR repeat profile. 160 193 7.906
12 g11349.t5 SMART SM00028 tpr_5 118 151 0.24
13 g11349.t5 SMART SM00028 tpr_5 160 193 3.2E-5
9 g11349.t5 SUPERFAMILY SSF48452 TPR-like 76 214 7.01E-27

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF
GO:0005871 kinesin complex CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values