Gene loci information

Transcript annotation

  • This transcript has been annotated as Kinesin light chain.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11349 g11349.t7 isoform g11349.t7 15748279 15749367
chr_1 g11349 g11349.t7 exon g11349.t7.exon1 15748279 15749068
chr_1 g11349 g11349.t7 cds g11349.t7.CDS1 15748280 15749068
chr_1 g11349 g11349.t7 exon g11349.t7.exon2 15749182 15749367
chr_1 g11349 g11349.t7 cds g11349.t7.CDS2 15749182 15749367
chr_1 g11349 g11349.t7 TSS g11349.t7 NA NA
chr_1 g11349 g11349.t7 TTS g11349.t7 NA NA

Sequences

>g11349.t7 Gene=g11349 Length=976
ATGACACAAATGACCCAAGAAGAAATTGTCACAAACACAAAGACGGTCTTGCAGGGACTT
GAAGCACTACGACATGAACACATGTCAATTATGTCTGGTCTCACTGAAGGCAAAAAAGAT
CCAGACAAAGTAGACATTATCCAAAAAAATATTGAAAACATTGAATTGGGTTTAGGTGAA
GCTCAGGTCATTGTAGTGTTAGCGTCACATTTACAAAATATTGAAGCCGAAAAACAGAAA
TTACGGACACAAGTTCGGCGTCTGTGTCAAGAAAATGCATGGCTTCGAGATGAATTAGCA
AATACACAACAAAAATTGCAAACATCAGAGCAAATGGTGGCACAACTTGAAGAAGAGAAA
AAACATCTTGATTTTATGCAATCTGTACGCAAATATGATGAAAATCAAGACGAGATTAAT
GAAAATGAAAAGTCACGTACTGATCCAGTCGTTGAATTGTTTCCTGAAGATGAACAAGAA
GATCGCAACAATATGTCGCCTACACCACCAAGTCAATTTGCAAATCAAGCTAATGCCGGT
TATGAAATTCCAGCTCGTCTTAGAACACTTCATAATCTCGTTATTCAATATGCATCGCAA
GGGCGTTATGAGGTAGCAGTACCATTGTGCAAACAAGCACTTGAAGATCTTGAAAAAACT
AGTGGACATGATCATCCAGATGTGGCAACAATGCTCAACATTCTCGCATTAGTTTATCGT
GATCAAAACAAATATAAGGAAGCAGCCAATTTATTAAATGATGCTCTTACAATTCGAGAG
AAAACGCTTGGCGAAAATCATCCAGCAGTTGCTGCAACTCTTAATAATTTGGCTGTCTTA
TATGGAAAGCGTGGCAAATATAAAGATGCAGAGCCACTATGCAAACGTGCATTAGAAATT
CGAGAAAAAGTTCTTGGCAAAGATCATCCAGATGTTGCAAAGCAATTAAATAATTTGGCA
TTATTGTGTCAAAATC

>g11349.t7 Gene=g11349 Length=325
MTQMTQEEIVTNTKTVLQGLEALRHEHMSIMSGLTEGKKDPDKVDIIQKNIENIELGLGE
AQVIVVLASHLQNIEAEKQKLRTQVRRLCQENAWLRDELANTQQKLQTSEQMVAQLEEEK
KHLDFMQSVRKYDENQDEINENEKSRTDPVVELFPEDEQEDRNNMSPTPPSQFANQANAG
YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR
DQNKYKEAANLLNDALTIREKTLGENHPAVAATLNNLAVLYGKRGKYKDAEPLCKRALEI
REKVLGKDHPDVAKQLNNLALLCQN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g11349.t7 Coils Coil Coil 64 119 -
11 g11349.t7 Gene3D G3DSA:1.25.40.10 - 170 325 5.4E-78
3 g11349.t7 PANTHER PTHR45783 KINESIN LIGHT CHAIN 3 325 3.7E-160
4 g11349.t7 PANTHER PTHR45783:SF7 KINESIN LIGHT CHAIN 1 3 325 3.7E-160
5 g11349.t7 PRINTS PR00381 Kinesin light chain signature 83 100 4.6E-53
9 g11349.t7 PRINTS PR00381 Kinesin light chain signature 180 199 4.6E-53
8 g11349.t7 PRINTS PR00381 Kinesin light chain signature 202 220 4.6E-53
7 g11349.t7 PRINTS PR00381 Kinesin light chain signature 267 284 4.6E-53
6 g11349.t7 PRINTS PR00381 Kinesin light chain signature 311 325 4.6E-53
1 g11349.t7 Pfam PF13424 Tetratricopeptide repeat 187 261 2.4E-17
2 g11349.t7 Pfam PF13374 Tetratricopeptide repeat 270 311 1.6E-15
13 g11349.t7 ProSitePatterns PS01160 Kinesin light chain repeat. 254 295 -
18 g11349.t7 ProSiteProfiles PS50005 TPR repeat profile. 187 220 5.281
19 g11349.t7 ProSiteProfiles PS50293 TPR repeat region circular profile. 187 304 13.875
17 g11349.t7 ProSiteProfiles PS50005 TPR repeat profile. 229 262 8.378
16 g11349.t7 ProSiteProfiles PS50005 TPR repeat profile. 271 304 7.906
15 g11349.t7 SMART SM00028 tpr_5 229 262 0.24
14 g11349.t7 SMART SM00028 tpr_5 271 304 3.2E-5
10 g11349.t7 SUPERFAMILY SSF48452 TPR-like 187 323 3.21E-26

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF
GO:0005871 kinesin complex CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed