Gene loci information

Transcript annotation

  • This transcript has been annotated as Dynein beta chain, ciliary.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11350 g11350.t1 isoform g11350.t1 15750637 15760222
chr_1 g11350 g11350.t1 exon g11350.t1.exon1 15750637 15750705
chr_1 g11350 g11350.t1 cds g11350.t1.CDS1 15750637 15750705
chr_1 g11350 g11350.t1 exon g11350.t1.exon2 15750759 15750878
chr_1 g11350 g11350.t1 cds g11350.t1.CDS2 15750759 15750878
chr_1 g11350 g11350.t1 exon g11350.t1.exon3 15750936 15751001
chr_1 g11350 g11350.t1 cds g11350.t1.CDS3 15750936 15751001
chr_1 g11350 g11350.t1 exon g11350.t1.exon4 15751058 15751148
chr_1 g11350 g11350.t1 cds g11350.t1.CDS4 15751058 15751148
chr_1 g11350 g11350.t1 exon g11350.t1.exon5 15751482 15751628
chr_1 g11350 g11350.t1 cds g11350.t1.CDS5 15751482 15751628
chr_1 g11350 g11350.t1 exon g11350.t1.exon6 15751687 15751994
chr_1 g11350 g11350.t1 cds g11350.t1.CDS6 15751687 15751994
chr_1 g11350 g11350.t1 exon g11350.t1.exon7 15752046 15752197
chr_1 g11350 g11350.t1 cds g11350.t1.CDS7 15752046 15752197
chr_1 g11350 g11350.t1 exon g11350.t1.exon8 15752266 15752776
chr_1 g11350 g11350.t1 cds g11350.t1.CDS8 15752266 15752776
chr_1 g11350 g11350.t1 exon g11350.t1.exon9 15752846 15752897
chr_1 g11350 g11350.t1 cds g11350.t1.CDS9 15752846 15752897
chr_1 g11350 g11350.t1 exon g11350.t1.exon10 15753240 15753531
chr_1 g11350 g11350.t1 cds g11350.t1.CDS10 15753240 15753531
chr_1 g11350 g11350.t1 exon g11350.t1.exon11 15753688 15753971
chr_1 g11350 g11350.t1 cds g11350.t1.CDS11 15753688 15753971
chr_1 g11350 g11350.t1 exon g11350.t1.exon12 15754036 15755081
chr_1 g11350 g11350.t1 cds g11350.t1.CDS12 15754036 15755081
chr_1 g11350 g11350.t1 exon g11350.t1.exon13 15755135 15755407
chr_1 g11350 g11350.t1 cds g11350.t1.CDS13 15755135 15755407
chr_1 g11350 g11350.t1 exon g11350.t1.exon14 15755624 15755653
chr_1 g11350 g11350.t1 cds g11350.t1.CDS14 15755624 15755653
chr_1 g11350 g11350.t1 exon g11350.t1.exon15 15755892 15756088
chr_1 g11350 g11350.t1 cds g11350.t1.CDS15 15755892 15756088
chr_1 g11350 g11350.t1 exon g11350.t1.exon16 15756151 15757359
chr_1 g11350 g11350.t1 cds g11350.t1.CDS16 15756151 15757359
chr_1 g11350 g11350.t1 exon g11350.t1.exon17 15757427 15757441
chr_1 g11350 g11350.t1 cds g11350.t1.CDS17 15757427 15757441
chr_1 g11350 g11350.t1 exon g11350.t1.exon18 15757497 15757633
chr_1 g11350 g11350.t1 cds g11350.t1.CDS18 15757497 15757633
chr_1 g11350 g11350.t1 exon g11350.t1.exon19 15757691 15757847
chr_1 g11350 g11350.t1 cds g11350.t1.CDS19 15757691 15757847
chr_1 g11350 g11350.t1 exon g11350.t1.exon20 15757906 15757926
chr_1 g11350 g11350.t1 cds g11350.t1.CDS20 15757906 15757926
chr_1 g11350 g11350.t1 exon g11350.t1.exon21 15757983 15758037
chr_1 g11350 g11350.t1 cds g11350.t1.CDS21 15757983 15758037
chr_1 g11350 g11350.t1 exon g11350.t1.exon22 15758095 15758289
chr_1 g11350 g11350.t1 cds g11350.t1.CDS22 15758095 15758289
chr_1 g11350 g11350.t1 exon g11350.t1.exon23 15758342 15758473
chr_1 g11350 g11350.t1 cds g11350.t1.CDS23 15758342 15758473
chr_1 g11350 g11350.t1 exon g11350.t1.exon24 15758530 15758674
chr_1 g11350 g11350.t1 cds g11350.t1.CDS24 15758530 15758674
chr_1 g11350 g11350.t1 exon g11350.t1.exon25 15758742 15758812
chr_1 g11350 g11350.t1 cds g11350.t1.CDS25 15758742 15758812
chr_1 g11350 g11350.t1 exon g11350.t1.exon26 15758875 15759073
chr_1 g11350 g11350.t1 cds g11350.t1.CDS26 15758875 15759073
chr_1 g11350 g11350.t1 exon g11350.t1.exon27 15759149 15759304
chr_1 g11350 g11350.t1 cds g11350.t1.CDS27 15759149 15759304
chr_1 g11350 g11350.t1 exon g11350.t1.exon28 15759360 15760222
chr_1 g11350 g11350.t1 cds g11350.t1.CDS28 15759360 15760222
chr_1 g11350 g11350.t1 TSS g11350.t1 NA NA
chr_1 g11350 g11350.t1 TTS g11350.t1 NA NA

Sequences

>g11350.t1 Gene=g11350 Length=6993
ATGTTTCACAGGTATATTTATGAACAACTTAGAAATGAAAAAATTAAGTCAATGGCATTG
ATATTGGAGCATACTGATTCTGCATATTTTCCTTGTTTTAAGTCAATGTTTAAAAATGTA
GTGACTGCATTAGCAGAAGCACGTGATATCACTCTTTACCTTAGTCCTCTTATGAAGCAC
TTTTTACAGTTTGAAGAAACAGATTTTTCTGAGAGCAAACCTTTACTTAAACCATTAATG
CACGTTGTATGTTTGTTATGGGCAAATTCAAACTATTATAGAACTTCTGCAAAATTAATT
GTTTTATTGAAACAAATCTGCAATATGATTATTCACCAAGCAAAAAGATTTTTAGATCCT
TCATCAATTTTTCATAGTGATATTGATGAAGCCATGCAAAGAATTTCACAAACTATTAAA
ATATTAAAATATTTTCGCACCATTTTTGATGAATATAAAGAAAACCTTGCACCATTTTTT
GGCGATAGACCAGTTTCACAATGGACTTTTCATCCTAACGCTGTTTTTGAAAGATTTAAT
GCATTTTTGGATCGTTTGCATACAATTCAATGGTTTTTCTATACTGTCATTGAATTTTTG
AAGCTTGAAAAAGTTGAGATAGGTGGCCTTAAGGGACGAATTTTGAGTGGAAGAATAACA
GCAGTGTCATTAGAATTCAATCAATGTTTTTCATCATTTGCTAGTAAAACGTATGATGTT
TTAGATCCTGATGATGAATCTTTCAAAGGGGATTTTTTGAAATTTCAAGAAAGAATTTTA
GAACTTGATATGAAACTTGCTGCAATTCTTTGTCAAGCATTTGATGATAGTCATAATCTT
GAAAGTGTTTTTAAACTCATCTCAATTGTTGGAACAGTTTTGGAAAGACCAAAAATTAAG
GAAGAATTTACTTTTAAATATCAACAGATTTTACACATGTTGGACGATGAAATATCAATT
TGTGAAACAATTTATGAGAAACAAATGGTTTCATATAGAACCAAAGGATATATAAATGTA
GAATTACGTGCACCACCAATTTCTTCTGCTCTTCGATGGGTGCATCAACTTAGTAGTCGT
ATTACTACACCAATTAAAAGTTTCCAAGCACTTCAACATCCCATTGTACAGACAGAAGAC
GCGCAAATGTTATTACTTCGTTATAACAATTTGATGGATAAATTAAACCGATTTCAAAAG
GATATATTTGAAAAATGGACTGAAAAAGTTCCAGAAAATATTGAATCAAACTTAAAGAAG
TCTTTGTTGGCGAGAGTGGAGAATTCAAAATTAATTACTTTAAATTTTCACTCTGAACTT
TCTGCTATTTTAAGAGAGGTTCATTATTTACGACTCATGCATAAAACTGATATACCAAAA
TGTGCAATTGCATTTTCTGAGGACCAAGAAATTTATAGAAGTTATATATTAAATTTAGAG
AAAAGCGTTGAATGGTATAATAATATATGTCGCAATTGTTTAGAAGTTGAAATTAAACTT
ATACAAGCTGAAATTGACCTTGCTGACTCTTTTGTCGAAAAAGGATGCACTGAACTTAAT
TGGAATTCAGAAAATATCACAGAATATATGCAAGACTTACGAGCTCCTGTCGAGTGTCTT
CATTTGCGAATTGTTCAAATTCAGGCGAACTTTAAAGAAATTTGTGATATAATGACTACA
TGGGCAAAAGCTCCATTATTTATTCGCAAAGACGGTAGGAAAGATGCTACACTTTGTGTT
GATGAACGCGTAGAAAGAACTCAAAAGCGCTACCAAGAGATGAGAGTTGTTGCAATTCGC
ATTCATGAATTACTAGAGGAAAATCTTCGTCTCTTTAGAATGGAAGGAAAAATGGATGAA
TCATGTTGGGAAGATTATGTATCATATTGTGATGATATTGTTTACAAAAGTCTTCTTCAT
ACAGTTGGTGTTAGCATTGCTTATATTGCTGATAATATGGATGTTGATGCGTGTTATCCA
CCGTTATTTGAATCACGAATGGAATTAGAAATTCCAAGCATGATTTTCATTCCATCACTT
GATTCAAATGATGAAAATGGCTTTAATCGTCTTCTTCACAATTTAGTCAATGATATTCTC
GGCATGTCAAAATTAATTCCTCGATTAAAAAAAGATGCTGATAAAACATATGAAGACATG
ATAACAAGTGAACCTGACATTAAAGATATGAAACATGAGATTCTTATTAGCGTTGAGAAA
GCTCTAGAAGAAGCATGTCAATTTTGTCGTAATTTCGAACGCTATTCATATTTGTGGCTC
GAAGATCGTGAATATTGCATGGATTTATTCTTAGAATATGGTCGTATTCTTGATCCGGAT
GAGATTGAAATGTGTAATAATAATGATCCGCAAGCACCTAAACCTACTCCACCGACGATA
GAAGCTTTTCGCGAAATGATTGATGGCTATGAATCATTACACGTTGAAATCGAAGCTATT
CAGCCAGTTCAAGTTTTTAGTGCTTTCTTTCAAGTCGATGTTCGTCCATTTCGACAGGCA
CTTATCAATATTGTTCGCAAATGGAGTAACATGTTTAAAGATCATCTCGTAAATAATGTA
ACAAACAGCTTGACAAGTCTTAGTGATTTCATTCACGAAGCCGATAAAGGGCTTCTTCAA
GTTGTTGAAGATTACGATACATTAGTATCAATTATGGCTTATTTACTTCAAGTCAAGGAG
CGTGCAGTAACCACTGATATTATGTTTGAACCTATGAAAGAAACAATTGATTTGTTGAAA
TATTATGATATGGAAATATCAGAAGAAGTAAATGTACTTCTTCAAGAACTTCCTGAACAG
TGGAACAACACTAAAAAATTAGCAGTTACAGTGAAGCAGCAAGTTGCACCTTTGCAAGCT
ACGGAAGTTGTTTCTATTAGAAATCGTATTTCAAATTTTGATTTACATATTTCGGTTTTC
CGTGATATTTTTCGCACATATGAATTCTTTAAATTTGATTGTCCTCAACCTTATGAATTA
TTGGATAGGATAAGTGATGATATATTTCGATTAGAAGGAGATATGGCTGCAATTAATGAC
AGTGGAAGTCTTTTTGAAGTCAATGTGCCTGAATTTAAATTGCTTAGACAGTGTCGTCGC
GAATTAAAAATGCTAAAGCAATTATGGGACTACGTTTATATTGTGAAAACATGCATTGAA
GATTGGAAAACAACACCATGGCGAAAAATTGATGTTGAGAATATGGACATAGAGTGTAAA
AAATTTGCAAAAGACGTCAGATTGCTCGATAAGGATATGCGTCCTTGGGATACTTATATT
CAGCTCGAAGCAACTGTCAAAAACATGCTGACGAGTTTAAGAGCTGTGGGTGAGCTTCAA
AATCCAGCAATTCGAGAACGTCATTGGCACCAACTTATGACATCTACTAAAGCTCTCTCA
TCATTGCCTCCAGAAGTCACTGTTAAATTCATCATGGATCAAGAAACAACTCTAAGTGAA
TTGTTAGCGCTTAACTTGCACGAGTGTGAAGAAGAAGTGAAAAACATTGTTGACAAAGCT
GTAAAGGAGATGAGCATGGAGAAAATATTAAGAGATTTAAATACTACATGGAGTGTAATG
GAATTTGATAGTGAAATACATCCAAGAACACAATGCAGACTTTTGAAAACTTCTGAGGAA
CTGATTGAGACATTAGAAGAGAATCAAGTTGTCTTACAGAATTTGATAACATCAAAATTT
ATTGCTCACTTTCTTGATGAAGTATCATCATGGCAAAAGAAGTTGATGATGGCTGATTCA
GTGATTAGTGTATGGTTTGAAGTGCAAAGAACATGGACTCATCTTGAATCGATTTTTATG
AGCTCGGAAGATATACGAAAACAGCTTCCAGTTGATTCAGATCGTTTTGATAATATTGAT
CGTGAATTTAAAATTTTAATGCAAGAAATGGCACTTGATAATAATGTAATTAAAGCGACA
AATCGAGATGGATTATGTGAGCGTTTAGAAGAATTGCAGAAACAACTTGTTCTTTGTGAA
AAAGCACTTGCAGAATATTTAGAAACTAAGCGACTTTATTTCCCTCGATTTTATTTTGTG
AGTTCAGCAGATTTATTGGATATTTTAAGCATTGGAAATCAACCTAAACTTGTAATGAAG
CATTTAACAAAACTTTTTGATTCTATCGCTAAACTTGAACTTGGTAAAAGAGAAAATGGT
GATATATGCAGTTTGGGAATGTATGCTAAAGATGGCGAATATATAAAATTTGACGAAGAT
AGTGAATGCGTAGGAGCAGTTGAAGTTTGGCTTAATAAAATTCAAATTCGCATGAGAGCA
AGCTTAAGATGGTATATGTTAAATGCAGTTACACAATATGAAGAAAAACCAAGAGATCAA
TGGTTATTTGATTTCCCTGCACAGATTTCGCTTTGTGGCACACAAATTTGGTGGACCACA
GAAGTAAATATTGCATTCAGTCGTCTTGAAGAAGGTTATGATAATGCTTTAAAAGATTAT
TATAAGAAACAAATATCTCAGCTTTCAACATTAATTACACTTTTAATTGGTGAACTTACT
AAAGGTGATCGTCAAAAAATCATGACCATTTGTACAGTCGATGTTCATTCTCGTGATGTT
GTCAGTCATTTGATACAAACAAAAGTTGAAATGGCTACAGCATTTCAATGGCAAAGTCAA
CTGAGACATCGCTGGGATGACGATGATGGAGATTGTTTTGCAAATATCTGTGATGCACAA
TTTCAATACAGTCATGAATACTTGGGTTGTACACCTCGATTGGTCATTACACCATTAACT
GATCGTTGTTATATAACATTGACACAAAGTTTGCATTTAATTATGGGTGGTGGTCCTGCC
GGTCCGGCTGGAACTGGAAAGACCGAGACAACAAAAGATTTAGGAAGAGCTCTTGGCATA
ATGGTTTATGTATTTAACTGCAGTGAACAAATGGATTATAAATCTTGTGGAAATATTTAT
AAAGGATTGGCACAAACAGGTGCATGGGGATGCTTTGATGAGTTTAACCGAATTTCAGTC
GAAGTATTGTCTGTCGTAGCTGTTCAAGTAAAATCTGTACAAGATGCTATCAGAGATAAG
AAATCAACATTTAATTTTATGGGAGAAATGATTGCACTTGTGCCATCGGTTGGAATATTT
ATAACAATGAATCCTGGTTATGCGGGTCGTACTGAATTGCCCGAAAATTTAAAAGCACTA
TTTCGTCCATGTGCTATGTGTGTTCCTGATTTCGAGCTTATTTGTGAGATTATGTTGGTT
GCTGAAGGATTTCAAGATGCAAGAGTTCTTGCTAGAAAGTTTATTACACTTTATACTTTA
TGTAAAGAACTTCTATCGAAACAAGATCATTATGATTGGGGTTTACGTGCTATTAAATCT
GTGTTGGTTGTTGCTGGATCTTTAAAACGAGGAGATTGTGCAAGGCCCGAAGAGGAAGTT
CTTATGAGAGCATTGCGTGATTTTAATATTCCAAAAATTGTTACTGATGATATGCCTGTA
TTTATTGGTTTGATATCAGACTTGTTTCCTGCGTTAGATGTTCCTAGAAAACGTGATGTT
GAGTTTGAAAAGGTTGTTAAACAAGCAACTACTGACTTGAAGCTTCAAGCTGAGGATAAC
TTTGTACTAAAAGTTGTTCAATTAGAAGAATTGTTTGAAGTTCGCCATTCAGTCTTTATT
GTTGGGAACGCTGGCACAGGAAAATCGAGTGTATGGAAAACACTTTATAAAGCATACCAA
AATATTGGTAAAAAGCCCATGTTCAATGATTTGAATCCAAAGGCTGTAACAAATGATGAA
TTATTTGGCATAATTAATCCTGCAACAAGAGAGTGGAAAGATGGATTATTTTCTGTAATT
ATGCGTGATCAAGCAGCATTAACTGGAGAGAATCCCAAATGGATTATTTTAGATGGTGAT
ATAGATCCAATGTGGATTGAATCACTAAATACAGTTATGGATGATAACAGAGTTTTAACG
CTTGCAAGCAATGAACGTATTGCTTTGACACCAACTATGAGATTGTTATTTGAAATTTCT
AATCTTAGAACAGCAACACCAGCTACAGTTTCAAGAGCTGGTATACTTTACATTAATCCC
CAAGATTTAGGATGGAATCCTTATGTTACAAGCTATATTGAAACGCGAACAATACCAGCA
GAGAAATCAAACCTTGTTATTTTATTCGATAAATATACACCTGCATGTTTAGATAATGTT
AGAACACGATTCAAAAAAATCACACCTTTACCCGATATGGCACACATTCAATTACTTTGT
TACCTTCTTGAATGCTTGCTTATTCCATCTAATACACCAGCTGATTGTCCCAAGGAGTGG
CATGAAATTTATTTTGTGTTTGCTTGTGTCTGGGCATTTGGCAGCGCTTTGTTCCTCGAC
CAAACGGTGGACCATCGAGTTGAATTTAGTAAATGGTTTATTAATGAATTTAAAGCCGTA
AAATTTCCGCCACAAGGTACAGTTTTTGATTATTATATTGATCAAGACAACAAAAATATG
GTCCCCTGGACAGACCGTTTGCCAAGATTCGAGATGGATGCAGACACTCCTTTGCAAGCC
GTATTAGTACATACGGCCGAGACAATTAGAGTCCGATATTTTTTGGACATGTTGATGGAA
ATGAAACATCCAGTTATGTTAGTCGGCAATGCGGGCGTGGGCAAATCCGTAATCATAAAC
GATAAAATTCACTCACTTCCTGAAAATTATGCTATAACCAATATTCCATTAAATTTTTAT
ACAACCTCGGAAATGCTTCAAAAAGTTTTAGAAAAACCACTCGAGAAAAAAGCTGGAAGA
AATTTCGGCCCTCCTGGTAGTAAATCAATGGTTTACTTTATTGGTAAGAATGTTTATTTT
ATAATTATTTTTCCACGTAACTATTTAATCATGCACAGTGGGTCAGAATTAAAAATTTGT
GCAAAAAATATTGCTGAAACTTGTAGATTATGA

>g11350.t1 Gene=g11350 Length=2330
MFHRYIYEQLRNEKIKSMALILEHTDSAYFPCFKSMFKNVVTALAEARDITLYLSPLMKH
FLQFEETDFSESKPLLKPLMHVVCLLWANSNYYRTSAKLIVLLKQICNMIIHQAKRFLDP
SSIFHSDIDEAMQRISQTIKILKYFRTIFDEYKENLAPFFGDRPVSQWTFHPNAVFERFN
AFLDRLHTIQWFFYTVIEFLKLEKVEIGGLKGRILSGRITAVSLEFNQCFSSFASKTYDV
LDPDDESFKGDFLKFQERILELDMKLAAILCQAFDDSHNLESVFKLISIVGTVLERPKIK
EEFTFKYQQILHMLDDEISICETIYEKQMVSYRTKGYINVELRAPPISSALRWVHQLSSR
ITTPIKSFQALQHPIVQTEDAQMLLLRYNNLMDKLNRFQKDIFEKWTEKVPENIESNLKK
SLLARVENSKLITLNFHSELSAILREVHYLRLMHKTDIPKCAIAFSEDQEIYRSYILNLE
KSVEWYNNICRNCLEVEIKLIQAEIDLADSFVEKGCTELNWNSENITEYMQDLRAPVECL
HLRIVQIQANFKEICDIMTTWAKAPLFIRKDGRKDATLCVDERVERTQKRYQEMRVVAIR
IHELLEENLRLFRMEGKMDESCWEDYVSYCDDIVYKSLLHTVGVSIAYIADNMDVDACYP
PLFESRMELEIPSMIFIPSLDSNDENGFNRLLHNLVNDILGMSKLIPRLKKDADKTYEDM
ITSEPDIKDMKHEILISVEKALEEACQFCRNFERYSYLWLEDREYCMDLFLEYGRILDPD
EIEMCNNNDPQAPKPTPPTIEAFREMIDGYESLHVEIEAIQPVQVFSAFFQVDVRPFRQA
LINIVRKWSNMFKDHLVNNVTNSLTSLSDFIHEADKGLLQVVEDYDTLVSIMAYLLQVKE
RAVTTDIMFEPMKETIDLLKYYDMEISEEVNVLLQELPEQWNNTKKLAVTVKQQVAPLQA
TEVVSIRNRISNFDLHISVFRDIFRTYEFFKFDCPQPYELLDRISDDIFRLEGDMAAIND
SGSLFEVNVPEFKLLRQCRRELKMLKQLWDYVYIVKTCIEDWKTTPWRKIDVENMDIECK
KFAKDVRLLDKDMRPWDTYIQLEATVKNMLTSLRAVGELQNPAIRERHWHQLMTSTKALS
SLPPEVTVKFIMDQETTLSELLALNLHECEEEVKNIVDKAVKEMSMEKILRDLNTTWSVM
EFDSEIHPRTQCRLLKTSEELIETLEENQVVLQNLITSKFIAHFLDEVSSWQKKLMMADS
VISVWFEVQRTWTHLESIFMSSEDIRKQLPVDSDRFDNIDREFKILMQEMALDNNVIKAT
NRDGLCERLEELQKQLVLCEKALAEYLETKRLYFPRFYFVSSADLLDILSIGNQPKLVMK
HLTKLFDSIAKLELGKRENGDICSLGMYAKDGEYIKFDEDSECVGAVEVWLNKIQIRMRA
SLRWYMLNAVTQYEEKPRDQWLFDFPAQISLCGTQIWWTTEVNIAFSRLEEGYDNALKDY
YKKQISQLSTLITLLIGELTKGDRQKIMTICTVDVHSRDVVSHLIQTKVEMATAFQWQSQ
LRHRWDDDDGDCFANICDAQFQYSHEYLGCTPRLVITPLTDRCYITLTQSLHLIMGGGPA
GPAGTGKTETTKDLGRALGIMVYVFNCSEQMDYKSCGNIYKGLAQTGAWGCFDEFNRISV
EVLSVVAVQVKSVQDAIRDKKSTFNFMGEMIALVPSVGIFITMNPGYAGRTELPENLKAL
FRPCAMCVPDFELICEIMLVAEGFQDARVLARKFITLYTLCKELLSKQDHYDWGLRAIKS
VLVVAGSLKRGDCARPEEEVLMRALRDFNIPKIVTDDMPVFIGLISDLFPALDVPRKRDV
EFEKVVKQATTDLKLQAEDNFVLKVVQLEELFEVRHSVFIVGNAGTGKSSVWKTLYKAYQ
NIGKKPMFNDLNPKAVTNDELFGIINPATREWKDGLFSVIMRDQAALTGENPKWIILDGD
IDPMWIESLNTVMDDNRVLTLASNERIALTPTMRLLFEISNLRTATPATVSRAGILYINP
QDLGWNPYVTSYIETRTIPAEKSNLVILFDKYTPACLDNVRTRFKKITPLPDMAHIQLLC
YLLECLLIPSNTPADCPKEWHEIYFVFACVWAFGSALFLDQTVDHRVEFSKWFINEFKAV
KFPPQGTVFDYYIDQDNKNMVPWTDRLPRFEMDADTPLQAVLVHTAETIRVRYFLDMLME
MKHPVMLVGNAGVGKSVIINDKIHSLPENYAITNIPLNFYTTSEMLQKVLEKPLEKKAGR
NFGPPGSKSMVYFIGKNVYFIIIFPRNYLIMHSGSELKICAKNIAETCRL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g11350.t1 Coils Coil Coil 381 401 -
18 g11350.t1 Coils Coil Coil 1215 1235 -
20 g11350.t1 Coils Coil Coil 1322 1349 -
19 g11350.t1 Coils Coil Coil 2330 2330 -
12 g11350.t1 Gene3D G3DSA:1.20.140.100 - 1185 1352 2.2E-51
13 g11350.t1 Gene3D G3DSA:3.20.180.20 - 1353 1452 4.1E-23
16 g11350.t1 Gene3D G3DSA:1.20.58.1120 - 1453 1597 1.4E-45
10 g11350.t1 Gene3D G3DSA:3.40.50.300 - 1598 1747 5.0E-70
15 g11350.t1 Gene3D G3DSA:1.10.8.710 - 1748 1857 5.6E-40
11 g11350.t1 Gene3D G3DSA:3.40.50.300 - 1874 2294 5.5E-109
14 g11350.t1 Gene3D G3DSA:1.10.472.130 - 2066 2205 5.5E-109
6 g11350.t1 PANTHER PTHR10676:SF374 DYNEIN HEAVY CHAIN AT 93AB, ISOFORM C 4 2295 0.0
7 g11350.t1 PANTHER PTHR10676 DYNEIN HEAVY CHAIN FAMILY PROTEIN 4 2295 0.0
4 g11350.t1 Pfam PF08385 Dynein heavy chain, N-terminal region 1 5 529 3.6E-145
2 g11350.t1 Pfam PF08393 Dynein heavy chain, N-terminal region 2 1035 1444 6.9E-120
1 g11350.t1 Pfam PF12774 Hydrolytic ATP binding site of dynein motor region 1583 1909 2.2E-152
5 g11350.t1 Pfam PF17852 Dynein heavy chain AAA lid domain 2068 2185 1.7E-24
3 g11350.t1 Pfam PF12775 P-loop containing dynein motor region 2190 2294 1.5E-31
22 g11350.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 2122 -
23 g11350.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 2123 2139 -
21 g11350.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 2140 2330 -
8 g11350.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1600 1812 8.38E-25
9 g11350.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1829 2041 2.55E-15

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0007018 microtubule-based movement BP
GO:0005524 ATP binding MF
GO:0008569 minus-end-directed microtubule motor activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values