Gene loci information

Transcript annotation

  • This transcript has been annotated as Dynein beta chain, ciliary.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11354 g11354.t1 isoform g11354.t1 15775260 15782061
chr_1 g11354 g11354.t1 exon g11354.t1.exon1 15775260 15775649
chr_1 g11354 g11354.t1 cds g11354.t1.CDS1 15775260 15775649
chr_1 g11354 g11354.t1 exon g11354.t1.exon2 15775711 15776111
chr_1 g11354 g11354.t1 cds g11354.t1.CDS2 15775711 15776111
chr_1 g11354 g11354.t1 exon g11354.t1.exon3 15776320 15777116
chr_1 g11354 g11354.t1 cds g11354.t1.CDS3 15776320 15777116
chr_1 g11354 g11354.t1 exon g11354.t1.exon4 15777170 15777491
chr_1 g11354 g11354.t1 cds g11354.t1.CDS4 15777170 15777491
chr_1 g11354 g11354.t1 exon g11354.t1.exon5 15777554 15778121
chr_1 g11354 g11354.t1 cds g11354.t1.CDS5 15777554 15778121
chr_1 g11354 g11354.t1 exon g11354.t1.exon6 15778897 15779598
chr_1 g11354 g11354.t1 cds g11354.t1.CDS6 15778897 15779598
chr_1 g11354 g11354.t1 exon g11354.t1.exon7 15779842 15780026
chr_1 g11354 g11354.t1 cds g11354.t1.CDS7 15779842 15780026
chr_1 g11354 g11354.t1 exon g11354.t1.exon8 15780085 15780725
chr_1 g11354 g11354.t1 cds g11354.t1.CDS8 15780085 15780725
chr_1 g11354 g11354.t1 exon g11354.t1.exon9 15780784 15781385
chr_1 g11354 g11354.t1 cds g11354.t1.CDS9 15780784 15781385
chr_1 g11354 g11354.t1 exon g11354.t1.exon10 15781444 15782061
chr_1 g11354 g11354.t1 cds g11354.t1.CDS10 15781444 15782061
chr_1 g11354 g11354.t1 TSS g11354.t1 NA NA
chr_1 g11354 g11354.t1 TTS g11354.t1 NA NA

Sequences

>g11354.t1 Gene=g11354 Length=5226
ATGCAGACCGATATTGTAAAAAAATCAGTAGAGGAATTAGATGAATCGGTTGTATTTGAT
AAACCCAATATATTTTGTCACTTTGCCGGAGGAATCGGAGAGCCAAAATACATGCCAATA
GCCGACTGGCAAACATTGACAAAATTATTGCAAGAAGCACAAGTGGCATACAACGATATC
GTAGCTGCAATGAACTTAGTTTTATTCGAAGATGCAATGAATCATGTTTGTAGAATTAAT
AGAATATTAGAGTTACCTCGTGGTAATGCACTTTTGGTTGGGGTGGGCGGATCAGGTAAA
CAATCACTCTCGAGACTTGCAGCGTTCATAAGCAGTTTAGAGGTATCACAGATTCAACTA
AAGAAAGGTTATGGAATTCCGGATTTGAAAAAAGAACTTGCTGGTTTATATTTAAAATCT
GGAATGAAAAATGTTGGCATAATGTTTCTAATGACTGATGCTCAAGTGCCTAATGAACAT
TTTCTTGTACTTATCAATGATCTGCTTGCAAGTGGTGAAGTGCCCGATCTCTTTCCTGAT
GATGAAGTTGAAAACATTTTATCAGGTGTGAGAAATGAAGTCAAAGGTGCTGGTCTAGTT
GACACGAGAGAAAACTGCTGGAAATTTTTTATTGATCGTGTCAGACGTCAAATTAAAGTC
GTTCTCTGTTTTTCACCTGTTGGAAATACACTTCGAGTGCGTTCACGAAAATTTCCAGCA
ATTATCAATTGTACTCAAATTAATTGGTTTCATGAATGGCCACAAGAAGCTTTAATTTCT
GTTGCGCAAAGATTTCTACAGGATGTTGATATTCTTCCATATGAATATAAAGAGACTATT
TCACGTTTCATGTCATATGCTCATACTTCTGTCAATTCCATGTCACGTGTTTATTTGCAA
AATGAACGTCGTTACAACTATACTACTCCAAAATCCTATTTGGAACAAATTAGTCTTTAT
GGAAAATTACTTCACCAAAAACACAAAGAGCTACGATCAAAAGTTGGTCGTCTTGAAAAT
GGTCTTGATAAGTTGCGTTCGACTGCTGCTCAAGTAGATGAATTAAAAGAGAAACTAGCT
ATCCAAGAAATTGAATTAAGAGAGAAAAATGAAGCAGCCGATAGACTTATTGAAATAGTT
GGTATTGAAACTCAAAAAGTGCAAAATGAAAAAAGCATCGCTGACGAAGAAGAGAAAAAA
GTTGGATTTATTGCAGAAGAAGTTTCGAAAAAGCAAAGAGATTGTGAAGAAGATTTAGTG
AAAGCAGAACCTGCATTGAGTGCTGCACAAGCTGCTTTGAATACATTGAATAAAGCGAAT
TTGACAGAGTTGAAAAGTTTTGGTTCACCTCCTGGCGTAGTTACAAATGTTACAGCTGCA
GTTATGGTTTTATTGGCACCAAAAGGCAAAGTTCCTAAAGATCGCTCTTGGAAAGCTGCA
AAAATTGTTATGGCAAAGGTTGATGCGTTCTTAGATGCCTTGATCAATTACGACAAAGAA
AATATTCATCCTGAGATTATAAAAGCAATACAACCGTATTTAAAGAATCCAGAATTCGAA
CCTGATTTTGTACGATCAAAATCAGCTGCTGCCGCTGGTTTATGTGCTTGGGTTATCAAT
ATTATCAAGTTCTACGAAGTTTATTGTGATGTTGAACCAAAACGTAGAGCTTTGGAAGCT
GCAAACGCAGAACTTGCTGCCGCTCAAGATAAATTATTAGTTATCACTCAAAAAGTTGCT
TCACTTGAAGAACAATTAGCTAAATTGACAGCTGATTTTGAAAAGGCAACAGCTGATAAA
CTTCGATGTCAACAAGAAGCTGACCAAACGCAGGCTACTATACAACTTGCCAATCGTCTC
GTCGGTGGATTAGCAAGTGAGAATGTTAGATGGGCTGAAGCTGTTGCAGAATTCATGCAA
CAAGGAACGACCTTGCCTGGTGATATTTTACTTGTGACAGCTTTCATATCTTATGTTGGT
TGTTTCACAAAATCATTTAGAAATGATTTGTTACATAAAATGTGGTTGCCTCATATAAGA
GCACTTGAACCGCCCATTCCGATAAATGACACTATAGATCCGCTCAAACTCCTTACTGAT
GAAGCAACAATAGCACATTGGTTCAATGAAGGACTTCCATCTGATCGAATGTCTACTGAA
AATGCTACAATTCTAACAAACTCTGATCGATGGCCTTTAATGATTGATCCTCAATTGCAA
GGTTTGAAATGGATTAAGCAAAAATATGGTGAAAATCTAAAAGTCCTTAGATTAGGTCAA
AAAGGATACCTAGAAATAATTGAACAAGCTTTGGTTAAAGGTTCTACAGTTTTAATAGAG
AACATTGATGAACATATTGATCCTGTACTTAATCCTCTTTTGGGAAGAAATCTTATTAAA
AAAGGAAAAGCTATAAAAATTGGTGATAAAGAAGTCGAGTTCAACCCAAATTTTAGATTG
ATTTTACAAACAAAGCTGAGTAACCCCCATTATCAACCGGAGCAGCAAGCACAAACTACT
CTCATAAACTTCACTGTTACTCGTGATGGCTTAGAAGATCAATTACTAGCCGAAGTTGTA
AAAGTAGAAAGACCTGATTTGGAAGAATTAAAAGCAGATTTAACCAAACAACAAAATGAT
TTTAAAATTATGCTTAATGGTCTCGAAGATGATTTGCTTAGTCGATTATCATCAGCTGGT
GAAAACATTTTGGGAGATACTGCACTAGTAGAAAATTTAGAGACAACAAAAAAAACTGCA
GCAGAAATTGAAGAAAAAGTAGCAGAGGCGAAAGTAACTTCACAGGAAATTGATGTGGCG
CGTGAAATATATAGACCTGCTGCTGCAAGAGCTAGTTTACTTTATTTCATACTAAATGAT
TTGAATGCCATTAATCCTGTCTATCAATTTTCATTGAAAGCTTTCAGTGTAGTATTTCAA
AATGCCATAATCAAAGCAGAATTCACAGGCGAGGAAACTGTGCAAGAGAGAGTCATCAAA
TTAATTGACTGCATCACTTTTCAAGTCTTTCAATATACGACTCGTGGTCTTTTCGAGTGC
GACAAACTTATTTTTTCAAGTCAAATGGCCTTTCAAATATTATTAATATCAGAAGAAATT
ACCAGCATGGAATTAGATTTCTTATTGCGTTTTCCTATTAAGCCACATGTGACGAGTCCG
GCAAAAGAAGAATTCAGAAATCTAGATCGTGATATAGAAAATCAAGCAAAACGATGGAAG
AAAATTATCGAGTCTGAATGTCCCGAAAAGGAGAAATTTCCACAAGAGTGGAAAAATAAA
ACCGCATTGCAAAGATTGTGTATGATGAGAGCATTGAGACCGGATCGAATGTGTTATGCG
CTTACTGATTTTATTGAAGAGAAATTGGGATCGAAATATGTCAAAAACCGTACAATGGAA
TTCTCAAAGTCATTTGAAGAAGCGAGTCCAAGTACTCCGATTTTTTTCATACTCTCACCT
GGTGTCAATCCGTTGAAAGATGTAGAACAGTTAGGCAAACAGATGGGTTATACTGAAGAT
AATGGAAACTTTCATAATGTGAGTTTGGGTCAAGGTCAAGAGATTGTTGCTGAGGTTGCG
ATGGATGAAGGTGCAACTAAAGGTCATTGGGTAATTCTACAAAACATTCATTTAGTGCGT
AAGTGGCTTCCAGCACTCGAGAAAAAATTAGAGTTTTATTCTGAAGGTTCACACGATAAC
TATCGAGTTTTCATTAGTGCAGAACCAGCAGCAACTGCTGCTGCTCATATAATTCCGCAA
GGAATTTTAGAATCATCTATTAAAATTACCAATGAACCACCAACTGGAATTAAAGCAAAT
ATTCACAAAGCACTCGACAACTTTTCACAGGAGACACTTGAAATGTGTGGAAAAGAAGCT
GAATTCAAAGTCATATTATTCTCGCTTTGCTATTTTCATGCTGTCGTTGCTGAAAGACGC
AAATTTGGTCCACAAGGTTGGAATAAAATTTATCCTTTCAATGTTGGTGATTTGAACATC
AGTGTATCAGTCTTATACAACTATCTCGAAGCAAACGCAAAGGTACCATGGGAAGATTTA
AGATATCTTTTTGGAGAAATTATGTATGGTGGACATATCACAGACGATTGGGATCGACGT
CTCTGTATCACATATTTAGAAGAATATATGCAACCTGATTTAGTTGATGGAGAATTATAT
TTAGCACCTAATTTTCCAGCACCACCAAATACAGATTATCTCGGTTATCATAATTATATT
GATGAAATGATGCCTGCTGAAAGTCCTTACTTGTATGGGTTACATCCTAATGCAGAAATT
GGTTTCTTAACTACAACAAGTGAGAATTTATTCAGAACAGTTTTTGAAATGCAACCACGT
GATGCAGGTGCATCAGGTGGTACAACTGTTACAAGAGAGGATAAAGTTAAGCAGATTTTA
GATGAAATTCTTGAAAAATTACCAGAAGAATTTAATATGGCCGAGATCATGGGAAAAGTT
GAAGAACGAACACCTTATGTAATTGTTGCCTTCCAAGAATGTGAAAGAATGAATTATTTA
ACATCTGAGTTGAAAAGATCACTTAAAGAACTTGATTTGGGATTAAAGGGTGAACTTACT
GTAACTTCTGATATGGAACAACTCGAAAATTCATTATTTTTGGATCAAGTACCTACAATT
TGGGCATCGAGAGCATATCCATCTCTTCTTGGATTGTCAGCATGGTTTAATGATTTGGTT
TTACGTCTGCGCGAATTAGAAGCATGGTCAAGTGATTTTGTTTTACCCATTTGTGTATGG
TTAGCAGGATTTTTCAATCCTCAGTCTCTTCTGACAGCTATCATGCAGTCGACAGCTAGA
CGTTTTGAATTACCACTTGATAAAATGTGTCTGTATTGTGATGTCACGAAGAAGCAAAAG
GAAGATTTTACATCGGCGCCAAGAGAAGGAGCTTTCGTTTATGGAATATTTATGGAAGGT
GCTCGATGGGATGTAGCTCAAGGTGTTATTGCGGAATCAAGATTAAAAGAATTATATCCA
TTGTTACCAGTAATTAATATTCGTGCACTTACACAGGATAAACAAGATAATAGAAATATG
TACGAATGTCCAGTTTATAAAACACGTCAACGAGGACCAACATATATTTGGACATTCAAT
TTAAAAACTAAAGATAAGCCAGCAAAATGGGTGTTGGCAGGAGTTGCTTTGTTATTACAG
ACATAA

>g11354.t1 Gene=g11354 Length=1741
MQTDIVKKSVEELDESVVFDKPNIFCHFAGGIGEPKYMPIADWQTLTKLLQEAQVAYNDI
VAAMNLVLFEDAMNHVCRINRILELPRGNALLVGVGGSGKQSLSRLAAFISSLEVSQIQL
KKGYGIPDLKKELAGLYLKSGMKNVGIMFLMTDAQVPNEHFLVLINDLLASGEVPDLFPD
DEVENILSGVRNEVKGAGLVDTRENCWKFFIDRVRRQIKVVLCFSPVGNTLRVRSRKFPA
IINCTQINWFHEWPQEALISVAQRFLQDVDILPYEYKETISRFMSYAHTSVNSMSRVYLQ
NERRYNYTTPKSYLEQISLYGKLLHQKHKELRSKVGRLENGLDKLRSTAAQVDELKEKLA
IQEIELREKNEAADRLIEIVGIETQKVQNEKSIADEEEKKVGFIAEEVSKKQRDCEEDLV
KAEPALSAAQAALNTLNKANLTELKSFGSPPGVVTNVTAAVMVLLAPKGKVPKDRSWKAA
KIVMAKVDAFLDALINYDKENIHPEIIKAIQPYLKNPEFEPDFVRSKSAAAAGLCAWVIN
IIKFYEVYCDVEPKRRALEAANAELAAAQDKLLVITQKVASLEEQLAKLTADFEKATADK
LRCQQEADQTQATIQLANRLVGGLASENVRWAEAVAEFMQQGTTLPGDILLVTAFISYVG
CFTKSFRNDLLHKMWLPHIRALEPPIPINDTIDPLKLLTDEATIAHWFNEGLPSDRMSTE
NATILTNSDRWPLMIDPQLQGLKWIKQKYGENLKVLRLGQKGYLEIIEQALVKGSTVLIE
NIDEHIDPVLNPLLGRNLIKKGKAIKIGDKEVEFNPNFRLILQTKLSNPHYQPEQQAQTT
LINFTVTRDGLEDQLLAEVVKVERPDLEELKADLTKQQNDFKIMLNGLEDDLLSRLSSAG
ENILGDTALVENLETTKKTAAEIEEKVAEAKVTSQEIDVAREIYRPAAARASLLYFILND
LNAINPVYQFSLKAFSVVFQNAIIKAEFTGEETVQERVIKLIDCITFQVFQYTTRGLFEC
DKLIFSSQMAFQILLISEEITSMELDFLLRFPIKPHVTSPAKEEFRNLDRDIENQAKRWK
KIIESECPEKEKFPQEWKNKTALQRLCMMRALRPDRMCYALTDFIEEKLGSKYVKNRTME
FSKSFEEASPSTPIFFILSPGVNPLKDVEQLGKQMGYTEDNGNFHNVSLGQGQEIVAEVA
MDEGATKGHWVILQNIHLVRKWLPALEKKLEFYSEGSHDNYRVFISAEPAATAAAHIIPQ
GILESSIKITNEPPTGIKANIHKALDNFSQETLEMCGKEAEFKVILFSLCYFHAVVAERR
KFGPQGWNKIYPFNVGDLNISVSVLYNYLEANAKVPWEDLRYLFGEIMYGGHITDDWDRR
LCITYLEEYMQPDLVDGELYLAPNFPAPPNTDYLGYHNYIDEMMPAESPYLYGLHPNAEI
GFLTTTSENLFRTVFEMQPRDAGASGGTTVTREDKVKQILDEILEKLPEEFNMAEIMGKV
EERTPYVIVAFQECERMNYLTSELKRSLKELDLGLKGELTVTSDMEQLENSLFLDQVPTI
WASRAYPSLLGLSAWFNDLVLRLRELEAWSSDFVLPICVWLAGFFNPQSLLTAIMQSTAR
RFELPLDKMCLYCDVTKKQKEDFTSAPREGAFVYGIFMEGARWDVAQGVIAESRLKELYP
LLPVINIRALTQDKQDNRNMYECPVYKTRQRGPTYIWTFNLKTKDKPAKWVLAGVALLLQ
T

Protein features from InterProScan

Transcript Database ID Name Start End E.value
19 g11354.t1 Coils Coil Coil 328 372 -
18 g11354.t1 Coils Coil Coil 558 599 -
20 g11354.t1 Coils Coil Coil 913 933 -
10 g11354.t1 Gene3D G3DSA:3.40.50.300 - 44 250 2.9E-79
17 g11354.t1 Gene3D G3DSA:1.20.920.20 - 310 655 5.2E-111
15 g11354.t1 Gene3D G3DSA:3.40.50.11510 - 698 863 1.4E-62
16 g11354.t1 Gene3D G3DSA:1.10.8.1220 - 944 1035 1.1E-18
11 g11354.t1 Gene3D G3DSA:3.40.50.300 - 1137 1270 2.4E-33
13 g11354.t1 Gene3D G3DSA:1.10.8.720 - 1272 1435 1.5E-50
14 g11354.t1 Gene3D G3DSA:1.20.1270.280 - 1442 1606 4.7E-17
12 g11354.t1 Gene3D G3DSA:3.10.490.20 - 1607 1741 6.3E-9
7 g11354.t1 PANTHER PTHR10676:SF374 DYNEIN HEAVY CHAIN AT 93AB, ISOFORM C 1 1741 0.0
8 g11354.t1 PANTHER PTHR10676 DYNEIN HEAVY CHAIN FAMILY PROTEIN 1 1741 0.0
3 g11354.t1 Pfam PF12780 P-loop containing dynein motor region D4 64 323 1.4E-93
2 g11354.t1 Pfam PF12777 Microtubule-binding stalk of dynein motor 337 679 2.9E-182
4 g11354.t1 Pfam PF12781 ATP-binding dynein motor region 706 923 2.3E-84
6 g11354.t1 Pfam PF03028 Dynein heavy chain region D6 P-loop domain 1149 1270 1.2E-35
1 g11354.t1 Pfam PF18198 Dynein heavy chain AAA lid domain 1285 1438 1.4E-55
5 g11354.t1 Pfam PF18199 Dynein heavy chain C-terminal domain 1445 1739 1.1E-92
9 g11354.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 64 329 1.35E-24

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0007018 microtubule-based movement BP
GO:0030286 dynein complex CC
GO:0008569 minus-end-directed microtubule motor activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values