General information for g11359.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Probable phosphorylase b kinase regulatory subunit beta.
Parent gene
- The parent gene g11359 is located on chr_1: 15796706..15798067 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11359 | g11359.t2 | TTS | g11359.t2 | 15792500 | 15792500 |
| chr_1 | g11359 | g11359.t2 | isoform | g11359.t2 | 15792618 | 15798067 |
| chr_1 | g11359 | g11359.t2 | exon | g11359.t2.exon1 | 15792618 | 15792794 |
| chr_1 | g11359 | g11359.t2 | cds | g11359.t2.CDS1 | 15792618 | 15792794 |
| chr_1 | g11359 | g11359.t2 | exon | g11359.t2.exon2 | 15792857 | 15793403 |
| chr_1 | g11359 | g11359.t2 | cds | g11359.t2.CDS2 | 15792857 | 15793403 |
| chr_1 | g11359 | g11359.t2 | exon | g11359.t2.exon3 | 15793469 | 15793617 |
| chr_1 | g11359 | g11359.t2 | cds | g11359.t2.CDS3 | 15793469 | 15793617 |
| chr_1 | g11359 | g11359.t2 | exon | g11359.t2.exon4 | 15793684 | 15793842 |
| chr_1 | g11359 | g11359.t2 | cds | g11359.t2.CDS4 | 15793684 | 15793842 |
| chr_1 | g11359 | g11359.t2 | exon | g11359.t2.exon5 | 15793898 | 15794689 |
| chr_1 | g11359 | g11359.t2 | cds | g11359.t2.CDS5 | 15793898 | 15794689 |
| chr_1 | g11359 | g11359.t2 | exon | g11359.t2.exon6 | 15796281 | 15796306 |
| chr_1 | g11359 | g11359.t2 | cds | g11359.t2.CDS6 | 15796281 | 15796306 |
| chr_1 | g11359 | g11359.t2 | exon | g11359.t2.exon7 | 15796370 | 15796507 |
| chr_1 | g11359 | g11359.t2 | cds | g11359.t2.CDS7 | 15796370 | 15796507 |
| chr_1 | g11359 | g11359.t2 | exon | g11359.t2.exon8 | 15796586 | 15796636 |
| chr_1 | g11359 | g11359.t2 | cds | g11359.t2.CDS8 | 15796586 | 15796636 |
| chr_1 | g11359 | g11359.t2 | exon | g11359.t2.exon9 | 15796696 | 15797662 |
| chr_1 | g11359 | g11359.t2 | cds | g11359.t2.CDS9 | 15796696 | 15797662 |
| chr_1 | g11359 | g11359.t2 | exon | g11359.t2.exon10 | 15797727 | 15797916 |
| chr_1 | g11359 | g11359.t2 | cds | g11359.t2.CDS10 | 15797727 | 15797916 |
| chr_1 | g11359 | g11359.t2 | exon | g11359.t2.exon11 | 15798033 | 15798067 |
| chr_1 | g11359 | g11359.t2 | cds | g11359.t2.CDS11 | 15798033 | 15798067 |
| chr_1 | g11359 | g11359.t2 | TSS | g11359.t2 | 15798131 | 15798131 |
Sequences
>g11359.t2 Gene=g11359 Length=3231
ATGGCAAGTGTAAAAACTGCTGAAAGTGAAATCCTAAAACCTTTTGGTCGGCAAGCAAGT
TTAGAAGATATAAATTTTCAAAATTTAGATCAATTTCTAAAGATTTCAAACTATGAGGAG
ACTATTAAACAATTGGACATTTATTATGGAATTGTTAAGAGGCAGCTTCTTCAAAATCAA
TCAGAAATAACTGGTCTATTTCCCGTACTGAGCACTGATAAAGAAGTCGGAAGTGTCCGT
GATACAGTTTATTGTGCTGCTGCAATTTGGAGTTTATATCAGGCTTATCGAAGAATTGAT
GATGATCGAGGAAAATCTTATGAGTTGGGACAAAGTGCAGTTAAAGCAATGCGTGGTGTG
CTTGAATGTTGGATAAAGCAAAGTCACAAAGTAGAACTTTTTAAACAACGACAATCTTCA
CCACATGCTTTGCATGTTAAATTTCATTTGCATACAGGAGAAGAAATTTACTCAGATGAT
AAGTACAATCATTTGCAAATTGATGTCGTTTCAACTTATTTGATTTTTCTAGTTCAAATG
ATTACCAGCGGTCTTCAAATTATTTATACACAAGATGAAGTTGCTTTTGTTCAGAATTTG
GTTTATTATGTTGAGAGAGCTTATCGAACACCAGATTTTGGAATGTGGGAGAGGGGAAGC
AAATATAACGATGGAACACCTGAAATTCATGCATCAAGCATTGGAATAGCTAAAAGTGCA
CTCGAGGCTATTAATGGATGTAATCTCTTTGGTGAGAAAGGTGCATCTTGGTCAGTTGTA
TATGTTGATATTGATGCACACAATAGAAACAGATCTATTTTTGAAACTATGCTTCCACGT
GAATCTAGTAGTAAAGGCGTTGACTGTGCATTGCTCCCAACACTTTCATTTCCTGCATTC
GCTTCACATGAGGATAGACTCGTTGATTTGACCAAAAATAATATTATATCACGATTACGT
GGCAAAAAGGGCTTCAAAAGATTCAGTCGTGATGGATATCTTTGTCGTTTAGAAGATAAA
ACTCGTCGATATTATCATAAAGCTGAAATCAAGGATTTTGAAGGAAATGAATGCGAATGG
CCAATGTTTTATACGTTTCTTATAATTGATGGTGTCTTTAAAAATCATGCGGAACAAATT
GAAGAGTATCAAATGGAATTAAGAAAGTGCATGTATTCCGACCTAAATGGAGATCCTGTT
GTATCAATGTTTTATATTCCGGACGGGGAGGGCATGTACACACGTTCAAGTTCAACAGCG
ATTTTCCTGATGGGACAGTCACTTTTTATAATTGCACAATTACTCACTGCTGGATTGCTT
CATGTTAATGAACTTGATCCGATTCGTCGTTATTTACCTTCTTATAATAGACCGCGTAAA
GGAGGTTCACGATATTCAGCTTTCCAGGGAACTGCTACGGATCTTGTCGTACAAATCGTT
TTAATTTCTGAATCTATGAGATTACAAGCAATGCTTATGACTTATGGAATAATGACACAG
ACACCACATGAAGTGGAACCTGTACAAATTTGGTCATCAACGGAATTAATTAAAATTTAT
CAGCAACTTGGTGTTAACAACAAAATTGGCCTCTCCGGAAGACCTTCACGTCCTGTCGGA
TCCTTAGGAACAAGCAAAATTTATCGAGTTTGTGGATCAACTATCATGTGCTACCCTCTT
ATATTTGAGGTTTCTGATTTTTACCTCTATCGTGATATGGCACTATTAATTGATGACATT
AAAACTGAATTGCAATTTGTTGGAAAATACTGGAGGCTTTCAGGTCGACCAACTGTATGT
TTATTAATTCGTGAAGAGCACATGCGTGATCCTCAATTTAAAGAAATGTTAGATTTGCTT
GCAATGCTAAAAAAAGGTTATTGCGATGGTATGAAAGTCAGAATTGGAAGACTTCAAAAC
CTAATATCAAGTTCGTGTATTGAACATTTGGATTTTGTTTCTGATTTACCAGATACATCA
GACAATTCTTTCAGACAAATTCATCATGAATACATAGGATATCAAAGTTTAACAGATGTC
CCTAAAGCAGCAGCTTATAGTGAAAATAAAATTTCTTGCACTGATTTTCATGCTAGACCG
ATGAGCGAAGTTATTGCCGCTTTGCACGGCACCGATTCAATCTTTTGTAAATGTCAACTA
TATGGTATAATTTTGGCACGTGAAGGACCACATTATGAGATCGCTGGAACAAGTGTTCAA
GACGCAATTACTGAGTTATATTATAAATCTGGATCATTACGTTACTGGCGAGGAGTTCGG
TATTGTTCTTCACTTTTACGTAAAACTGTAGATTCAATAAGTCCTTTCATTACTACTATT
CTTGTCAATGGAAAACAGATTTCAGTTGGTATGATTGGACAGAAAGAAATTGTTTTTGAT
AGACCAATGACACCATCAGAAATTCAGAATGCAATGTTTTCTTGCTTTAGTTGGATGGAT
ACAATTTATGCCGTACTTCAACAAGAAGTTGTTTTGTATTGTGGCAGACTTATTGCAACA
AATCCCGATATTTTTAAAGGAATTTTAAAAATACGTGTTGGTTGGGTAGTAGAAGCAATG
AAATTATATTTAGAAATGAAAGGACCAGAATCGGATATGGACACTGAAATTGAAAATTTA
TCACCATTTCAAATCAGACAGTTATTAATGACAGTTTTAACTGTTAGTCAATGGTCTGAT
GACAAGCTTGATACATTGCGTAGACGACAACTAGAAGGATGTTTGTGCCGTGTTCCGATT
AAGTTTTATAATTTAGTATGGGATGTACTTGATCGCTGTCCGATGGGTATTCAAGTGCAA
GGTCATCATTTGCCTGCTGTTCCGACTTTATCTAATATGTCACGCGGAGAATTACAATTT
TCTTTATTAGTTGAAGAAATGTTGCATCATATTCCAAATTCAGAGCGTCGGCAAATTTCT
GTCGAGTTACTATGTATTGTTGCAACTATTTTAAGTAGAAATCCTGAATTAAAGTTTCAA
CAAGTTTTGGATTTAGACATATTACTCGAAGATGCATTTTCAATGTATTGTAAAGATCAT
GACGTTTCACCATCGAGTGACATTTCGCCTCTCTTTTGTTTAAGCTATTCTCAGTCTGTT
GGTTATTTGGCTAGAGCAAGTGTCAACAGTGTTTTGCAAAAAGCTGCATTAACGACGGGC
TCAACGGACGAATTTCATGATCATATTGAAGATACTTGTAAAATTGCATAA
>g11359.t2 Gene=g11359 Length=1076
MASVKTAESEILKPFGRQASLEDINFQNLDQFLKISNYEETIKQLDIYYGIVKRQLLQNQ
SEITGLFPVLSTDKEVGSVRDTVYCAAAIWSLYQAYRRIDDDRGKSYELGQSAVKAMRGV
LECWIKQSHKVELFKQRQSSPHALHVKFHLHTGEEIYSDDKYNHLQIDVVSTYLIFLVQM
ITSGLQIIYTQDEVAFVQNLVYYVERAYRTPDFGMWERGSKYNDGTPEIHASSIGIAKSA
LEAINGCNLFGEKGASWSVVYVDIDAHNRNRSIFETMLPRESSSKGVDCALLPTLSFPAF
ASHEDRLVDLTKNNIISRLRGKKGFKRFSRDGYLCRLEDKTRRYYHKAEIKDFEGNECEW
PMFYTFLIIDGVFKNHAEQIEEYQMELRKCMYSDLNGDPVVSMFYIPDGEGMYTRSSSTA
IFLMGQSLFIIAQLLTAGLLHVNELDPIRRYLPSYNRPRKGGSRYSAFQGTATDLVVQIV
LISESMRLQAMLMTYGIMTQTPHEVEPVQIWSSTELIKIYQQLGVNNKIGLSGRPSRPVG
SLGTSKIYRVCGSTIMCYPLIFEVSDFYLYRDMALLIDDIKTELQFVGKYWRLSGRPTVC
LLIREEHMRDPQFKEMLDLLAMLKKGYCDGMKVRIGRLQNLISSSCIEHLDFVSDLPDTS
DNSFRQIHHEYIGYQSLTDVPKAAAYSENKISCTDFHARPMSEVIAALHGTDSIFCKCQL
YGIILAREGPHYEIAGTSVQDAITELYYKSGSLRYWRGVRYCSSLLRKTVDSISPFITTI
LVNGKQISVGMIGQKEIVFDRPMTPSEIQNAMFSCFSWMDTIYAVLQQEVVLYCGRLIAT
NPDIFKGILKIRVGWVVEAMKLYLEMKGPESDMDTEIENLSPFQIRQLLMTVLTVSQWSD
DKLDTLRRRQLEGCLCRVPIKFYNLVWDVLDRCPMGIQVQGHHLPAVPTLSNMSRGELQF
SLLVEEMLHHIPNSERRQISVELLCIVATILSRNPELKFQQVLDLDILLEDAFSMYCKDH
DVSPSSDISPLFCLSYSQSVGYLARASVNSVLQKAALTTGSTDEFHDHIEDTCKIA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g11359.t2 | PANTHER | PTHR10749:SF8 | PHOSPHORYLASE B KINASE REGULATORY SUBUNIT BETA | 29 | 1059 | 0.0 |
| 3 | g11359.t2 | PANTHER | PTHR10749 | PHOSPHORYLASE B KINASE REGULATORY SUBUNIT | 29 | 1059 | 0.0 |
| 1 | g11359.t2 | Pfam | PF00723 | Glycosyl hydrolases family 15 | 43 | 855 | 5.6E-134 |
| 6 | g11359.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 419 | - |
| 7 | g11359.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 420 | 442 | - |
| 5 | g11359.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 443 | 1076 | - |
| 4 | g11359.t2 | SUPERFAMILY | SSF48208 | Six-hairpin glycosidases | 38 | 468 | 1.53E-61 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005977 | glycogen metabolic process | BP |
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0005516 | calmodulin binding | MF |
KEGG
Orthology
- This transcript has been annotated with K07190 (phosphorylase kinase alpha/beta subunit)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
