General information for g11359.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Probable phosphorylase b kinase regulatory subunit beta.
Parent gene
- The parent gene g11359 is located on chr_1: 15796706..15798067 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11359 | g11359.t3 | TTS | g11359.t3 | 15792500 | 15792500 |
| chr_1 | g11359 | g11359.t3 | isoform | g11359.t3 | 15792618 | 15793617 |
| chr_1 | g11359 | g11359.t3 | exon | g11359.t3.exon1 | 15792618 | 15792794 |
| chr_1 | g11359 | g11359.t3 | cds | g11359.t3.CDS1 | 15792618 | 15792794 |
| chr_1 | g11359 | g11359.t3 | exon | g11359.t3.exon2 | 15792857 | 15793403 |
| chr_1 | g11359 | g11359.t3 | cds | g11359.t3.CDS2 | 15792857 | 15793403 |
| chr_1 | g11359 | g11359.t3 | exon | g11359.t3.exon3 | 15793469 | 15793617 |
| chr_1 | g11359 | g11359.t3 | cds | g11359.t3.CDS3 | 15793469 | 15793605 |
| chr_1 | g11359 | g11359.t3 | TSS | g11359.t3 | NA | NA |
Sequences
>g11359.t3 Gene=g11359 Length=873
ATTTCAGTTGGTATGATTGGACAGAAAGAAATTGTTTTTGATAGACCAATGACACCATCA
GAAATTCAGAATGCAATGTTTTCTTGCTTTAGTTGGATGGATACAATTTATGCCGTACTT
CAACAAGAAGTTGTTTTGTATTGTGGCAGACTTATTGCAACAAATCCCGATATTTTTAAA
GGAATTTTAAAAATACGTGTTGGTTGGGTAGTAGAAGCAATGAAATTATATTTAGAAATG
AAAGGACCAGAATCGGATATGGACACTGAAATTGAAAATTTATCACCATTTCAAATCAGA
CAGTTATTAATGACAGTTTTAACTGTTAGTCAATGGTCTGATGACAAGCTTGATACATTG
CGTAGACGACAACTAGAAGGATGTTTGTGCCGTGTTCCGATTAAGTTTTATAATTTAGTA
TGGGATGTACTTGATCGCTGTCCGATGGGTATTCAAGTGCAAGGTCATCATTTGCCTGCT
GTTCCGACTTTATCTAATATGTCACGCGGAGAATTACAATTTTCTTTATTAGTTGAAGAA
ATGTTGCATCATATTCCAAATTCAGAGCGTCGGCAAATTTCTGTCGAGTTACTATGTATT
GTTGCAACTATTTTAAGTAGAAATCCTGAATTAAAGTTTCAACAAGTTTTGGATTTAGAC
ATATTACTCGAAGATGCATTTTCAATGTATTGTAAAGATCATGACGTTTCACCATCGAGT
GACATTTCGCCTCTCTTTTGTTTAAGCTATTCTCAGTCTGTTGGTTATTTGGCTAGAGCA
AGTGTCAACAGTGTTTTGCAAAAAGCTGCATTAACGACGGGCTCAACGGACGAATTTCAT
GATCATATTGAAGATACTTGTAAAATTGCATAA
>g11359.t3 Gene=g11359 Length=286
MIGQKEIVFDRPMTPSEIQNAMFSCFSWMDTIYAVLQQEVVLYCGRLIATNPDIFKGILK
IRVGWVVEAMKLYLEMKGPESDMDTEIENLSPFQIRQLLMTVLTVSQWSDDKLDTLRRRQ
LEGCLCRVPIKFYNLVWDVLDRCPMGIQVQGHHLPAVPTLSNMSRGELQFSLLVEEMLHH
IPNSERRQISVELLCIVATILSRNPELKFQQVLDLDILLEDAFSMYCKDHDVSPSSDISP
LFCLSYSQSVGYLARASVNSVLQKAALTTGSTDEFHDHIEDTCKIA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g11359.t3 | PANTHER | PTHR10749:SF8 | PHOSPHORYLASE B KINASE REGULATORY SUBUNIT BETA | 2 | 269 | 0 |
| 3 | g11359.t3 | PANTHER | PTHR10749 | PHOSPHORYLASE B KINASE REGULATORY SUBUNIT | 2 | 269 | 0 |
| 1 | g11359.t3 | Pfam | PF00723 | Glycosyl hydrolases family 15 | 3 | 65 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005977 | glycogen metabolic process | BP |
| GO:0005516 | calmodulin binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
