General information for g11359.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Probable phosphorylase b kinase regulatory subunit beta.
Parent gene
- The parent gene g11359 is located on chr_1: 15796706..15798067 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11359 | g11359.t7 | isoform | g11359.t7 | 15796706 | 15798067 |
| chr_1 | g11359 | g11359.t7 | exon | g11359.t7.exon1 | 15796706 | 15797662 |
| chr_1 | g11359 | g11359.t7 | cds | g11359.t7.CDS1 | 15796706 | 15797662 |
| chr_1 | g11359 | g11359.t7 | exon | g11359.t7.exon2 | 15797727 | 15797916 |
| chr_1 | g11359 | g11359.t7 | cds | g11359.t7.CDS2 | 15797727 | 15797916 |
| chr_1 | g11359 | g11359.t7 | exon | g11359.t7.exon3 | 15798033 | 15798067 |
| chr_1 | g11359 | g11359.t7 | cds | g11359.t7.CDS3 | 15798033 | 15798067 |
| chr_1 | g11359 | g11359.t7 | TSS | g11359.t7 | 15798131 | 15798131 |
| chr_1 | g11359 | g11359.t7 | TTS | g11359.t7 | NA | NA |
Sequences
>g11359.t7 Gene=g11359 Length=1182
ATGGCAAGTGTAAAAACTGCTGAAAGTGAAATCCTAAAACCTTTTGGTCGGCAAGCAAGT
TTAGAAGATATAAATTTTCAAAATTTAGATCAATTTCTAAAGATTTCAAACTATGAGGAG
ACTATTAAACAATTGGACATTTATTATGGAATTGTTAAGAGGCAGCTTCTTCAAAATCAA
TCAGAAATAACTGGTCTATTTCCCGTACTGAGCACTGATAAAGAAGTCGGAAGTGTCCGT
GATACAGTTTATTGTGCTGCTGCAATTTGGAGTTTATATCAGGCTTATCGAAGAATTGAT
GATGATCGAGGAAAATCTTATGAGTTGGGACAAAGTGCAGTTAAAGCAATGCGTGGTGTG
CTTGAATGTTGGATAAAGCAAAGTCACAAAGTAGAACTTTTTAAACAACGACAATCTTCA
CCACATGCTTTGCATGTTAAATTTCATTTGCATACAGGAGAAGAAATTTACTCAGATGAT
AAGTACAATCATTTGCAAATTGATGTCGTTTCAACTTATTTGATTTTTCTAGTTCAAATG
ATTACCAGCGGTCTTCAAATTATTTATACACAAGATGAAGTTGCTTTTGTTCAGAATTTG
GTTTATTATGTTGAGAGAGCTTATCGAACACCAGATTTTGGAATGTGGGAGAGGGGAAGC
AAATATAACGATGGAACACCTGAAATTCATGCATCAAGCATTGGAATAGCTAAAAGTGCA
CTCGAGGCTATTAATGGATGTAATCTCTTTGGTGAGAAAGGTGCATCTTGGTCAGTTGTA
TATGTTGATATTGATGCACACAATAGAAACAGATCTATTTTTGAAACTATGCTTCCACGT
GAATCTAGTAGTAAAGGCGTTGACTGTGCATTGCTCCCAACACTTTCATTTCCTGCATTC
GCTTCACATGAGGATAGACTCGTTGATTTGACCAAAAATAATATTATATCACGATTACGT
GGCAAAAAGGGCTTCAAAAGATTCAGTCGTGATGGATATCTTTGTCGTTTAGAAGATAAA
ACTCGTCGATATTATCATAAAGCTGAAATCAAGGATTTTGAAGGAAATGAATGCGAATGG
CCAATGTTTTATACGTTTCTTATAATTGATGGTGTCTTTAAAAATCATGCGGAACAAATT
GAAGAGTATCAAATGGAATTAAGAAAGTGCATGTATTCCGAC
>g11359.t7 Gene=g11359 Length=394
MASVKTAESEILKPFGRQASLEDINFQNLDQFLKISNYEETIKQLDIYYGIVKRQLLQNQ
SEITGLFPVLSTDKEVGSVRDTVYCAAAIWSLYQAYRRIDDDRGKSYELGQSAVKAMRGV
LECWIKQSHKVELFKQRQSSPHALHVKFHLHTGEEIYSDDKYNHLQIDVVSTYLIFLVQM
ITSGLQIIYTQDEVAFVQNLVYYVERAYRTPDFGMWERGSKYNDGTPEIHASSIGIAKSA
LEAINGCNLFGEKGASWSVVYVDIDAHNRNRSIFETMLPRESSSKGVDCALLPTLSFPAF
ASHEDRLVDLTKNNIISRLRGKKGFKRFSRDGYLCRLEDKTRRYYHKAEIKDFEGNECEW
PMFYTFLIIDGVFKNHAEQIEEYQMELRKCMYSD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g11359.t7 | Gene3D | G3DSA:1.50.10.10 | - | 79 | 368 | 1.1e-05 |
| 2 | g11359.t7 | PANTHER | PTHR10749:SF8 | PHOSPHORYLASE B KINASE REGULATORY SUBUNIT BETA | 29 | 393 | 0.0e+00 |
| 3 | g11359.t7 | PANTHER | PTHR10749 | PHOSPHORYLASE B KINASE REGULATORY SUBUNIT | 29 | 393 | 0.0e+00 |
| 1 | g11359.t7 | Pfam | PF00723 | Glycosyl hydrolases family 15 | 43 | 391 | 0.0e+00 |
| 4 | g11359.t7 | SUPERFAMILY | SSF48208 | Six-hairpin glycosidases | 38 | 390 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005977 | glycogen metabolic process | BP |
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0005516 | calmodulin binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
