Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable phosphorylase b kinase regulatory subunit beta.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11359 g11359.t8 isoform g11359.t8 15796706 15798067
chr_1 g11359 g11359.t8 exon g11359.t8.exon1 15796706 15797662
chr_1 g11359 g11359.t8 cds g11359.t8.CDS1 15796706 15797539
chr_1 g11359 g11359.t8 exon g11359.t8.exon2 15797727 15798067
chr_1 g11359 g11359.t8 TSS g11359.t8 15798131 15798131
chr_1 g11359 g11359.t8 TTS g11359.t8 NA NA

Sequences

>g11359.t8 Gene=g11359 Length=1298
ATGGCAAGTGTAAAAACTGCTGAAAGTGAAATCCTGTAAGTTGAAGGCATATTTTTGTAA
TTTTTCAACACATATTAAATTGTTATGTTATGGCAAACTAAAGATATCTTTTCACTTTAT
TTTTGTATATTTTTTTTATTTCGCTTTTTAGAAAACCTTTTGGTCGGCAAGCAAGTTTAG
AAGATATAAATTTTCAAAATTTAGATCAATTTCTAAAGATTTCAAACTATGAGGAGACTA
TTAAACAATTGGACATTTATTATGGAATTGTTAAGAGGCAGCTTCTTCAAAATCAATCAG
AAATAACTGGTCTATTTCCCGTACTGAGCACTGATAAAGAAGTCGGAAGTGTCCGTGATA
CAGTTTATTGTGCTGCTGCAATTTGGAGTTTATATCAGGCTTATCGAAGAATTGATGATG
ATCGAGGAAAATCTTATGAGTTGGGACAAAGTGCAGTTAAAGCAATGCGTGGTGTGCTTG
AATGTTGGATAAAGCAAAGTCACAAAGTAGAACTTTTTAAACAACGACAATCTTCACCAC
ATGCTTTGCATGTTAAATTTCATTTGCATACAGGAGAAGAAATTTACTCAGATGATAAGT
ACAATCATTTGCAAATTGATGTCGTTTCAACTTATTTGATTTTTCTAGTTCAAATGATTA
CCAGCGGTCTTCAAATTATTTATACACAAGATGAAGTTGCTTTTGTTCAGAATTTGGTTT
ATTATGTTGAGAGAGCTTATCGAACACCAGATTTTGGAATGTGGGAGAGGGGAAGCAAAT
ATAACGATGGAACACCTGAAATTCATGCATCAAGCATTGGAATAGCTAAAAGTGCACTCG
AGGCTATTAATGGATGTAATCTCTTTGGTGAGAAAGGTGCATCTTGGTCAGTTGTATATG
TTGATATTGATGCACACAATAGAAACAGATCTATTTTTGAAACTATGCTTCCACGTGAAT
CTAGTAGTAAAGGCGTTGACTGTGCATTGCTCCCAACACTTTCATTTCCTGCATTCGCTT
CACATGAGGATAGACTCGTTGATTTGACCAAAAATAATATTATATCACGATTACGTGGCA
AAAAGGGCTTCAAAAGATTCAGTCGTGATGGATATCTTTGTCGTTTAGAAGATAAAACTC
GTCGATATTATCATAAAGCTGAAATCAAGGATTTTGAAGGAAATGAATGCGAATGGCCAA
TGTTTTATACGTTTCTTATAATTGATGGTGTCTTTAAAAATCATGCGGAACAAATTGAAG
AGTATCAAATGGAATTAAGAAAGTGCATGTATTCCGAC

>g11359.t8 Gene=g11359 Length=278
MRGVLECWIKQSHKVELFKQRQSSPHALHVKFHLHTGEEIYSDDKYNHLQIDVVSTYLIF
LVQMITSGLQIIYTQDEVAFVQNLVYYVERAYRTPDFGMWERGSKYNDGTPEIHASSIGI
AKSALEAINGCNLFGEKGASWSVVYVDIDAHNRNRSIFETMLPRESSSKGVDCALLPTLS
FPAFASHEDRLVDLTKNNIISRLRGKKGFKRFSRDGYLCRLEDKTRRYYHKAEIKDFEGN
ECEWPMFYTFLIIDGVFKNHAEQIEEYQMELRKCMYSD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g11359.t8 Gene3D G3DSA:1.50.10.10 - 7 252 1.6e-05
2 g11359.t8 PANTHER PTHR10749:SF8 PHOSPHORYLASE B KINASE REGULATORY SUBUNIT BETA 1 277 0.0e+00
3 g11359.t8 PANTHER PTHR10749 PHOSPHORYLASE B KINASE REGULATORY SUBUNIT 1 277 0.0e+00
1 g11359.t8 Pfam PF00723 Glycosyl hydrolases family 15 1 275 0.0e+00
4 g11359.t8 SUPERFAMILY SSF48208 Six-hairpin glycosidases 2 274 0.0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005977 glycogen metabolic process BP
GO:0005975 carbohydrate metabolic process BP
GO:0005516 calmodulin binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values