General information for g11362.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative 85/88 kDa calcium-independent phospholipase A2.
Parent gene
- The parent gene g11362 is located on chr_1: 15804956..15806209 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11362 | g11362.t4 | isoform | g11362.t4 | 15804956 | 15806209 |
| chr_1 | g11362 | g11362.t4 | exon | g11362.t4.exon1 | 15804956 | 15805548 |
| chr_1 | g11362 | g11362.t4 | cds | g11362.t4.CDS1 | 15804957 | 15805548 |
| chr_1 | g11362 | g11362.t4 | exon | g11362.t4.exon2 | 15805647 | 15805869 |
| chr_1 | g11362 | g11362.t4 | cds | g11362.t4.CDS2 | 15805647 | 15805869 |
| chr_1 | g11362 | g11362.t4 | exon | g11362.t4.exon3 | 15806200 | 15806209 |
| chr_1 | g11362 | g11362.t4 | cds | g11362.t4.CDS3 | 15806200 | 15806209 |
| chr_1 | g11362 | g11362.t4 | TSS | g11362.t4 | 15806364 | 15806364 |
| chr_1 | g11362 | g11362.t4 | TTS | g11362.t4 | NA | NA |
Sequences
>g11362.t4 Gene=g11362 Length=826
ATGTTTAGCGCCATTAAAAATTTATTGACGGGAGAGATCCCTCCAAGCAAAGTCATAGAG
AAAAGTTTAGATTCTATTGCAAGCTACAATGTTTTACAACGAGATGATTGCATGCTTCTG
TTTGCTCCACAAATAACCGATAATTCTACATCAAACACATCAAGTAAAAGTAAAAAGTTT
TACGAAATAATCCTCTATCGTCCTGCATCAGAGTCAATAAATTCATCTTATAGTTTATTT
CGTGCAGAAACACAGGAAGAAGCTTTGGCACGTTTTGAAGCTTATACCCATCGAGTACCC
AATTTTGTTACAATGGTTAATCAATACTATAATATTCCTGGATTACAAAAAGTTTGCGAT
CTTTTAACGGAAAATCCTTCATGGTCGATTGCACACTTGGTTGCATACTTTAATCTTACT
GAGTATTTATCGAATCCAGCTGTCGCAGAACTAATTGACTATCCTGATCATGTGAAATAT
ATGACACCACTTCAAGTTGCAATTAAAGCTAAAAATATTGAGGTTGTCAAAGGATTATTG
AACGTAACGAAATTAGATCATTTAGACTATAACAGCAATGGTATCTTTCATTACGCAGCA
AACACATCAAAAGAAATGATAAATATCTTGACTAGTAAGAGTTTAGTAAATTTAAATCAT
ATCAATTTAGATGGCATTACTCCACTACATCATGCTTGTTTAAGCAACAATCCTGATTGT
GTCAATGCATTGGTATGTGCGGGAGCTGATGTTAACATCTCCGCAAAACACGTTAATGGA
AGTGGAAAAGGGGGAAACAAATTGCAAAATAGAAATGCTCCTTCTA
>g11362.t4 Gene=g11362 Length=275
MFSAIKNLLTGEIPPSKVIEKSLDSIASYNVLQRDDCMLLFAPQITDNSTSNTSSKSKKF
YEIILYRPASESINSSYSLFRAETQEEALARFEAYTHRVPNFVTMVNQYYNIPGLQKVCD
LLTENPSWSIAHLVAYFNLTEYLSNPAVAELIDYPDHVKYMTPLQVAIKAKNIEVVKGLL
NVTKLDHLDYNSNGIFHYAANTSKEMINILTSKSLVNLNHINLDGITPLHHACLSNNPDC
VNALVCAGADVNISAKHVNGSGKGGNKLQNRNAPS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g11362.t4 | Gene3D | G3DSA:1.25.40.20 | - | 114 | 263 | 0.0000e+00 |
| 2 | g11362.t4 | PANTHER | PTHR24139 | CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 | 3 | 257 | 0.0000e+00 |
| 3 | g11362.t4 | PANTHER | PTHR24139:SF34 | 85/88 KDA CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 | 3 | 257 | 0.0000e+00 |
| 1 | g11362.t4 | Pfam | PF12796 | Ankyrin repeats (3 copies) | 193 | 254 | 0.0000e+00 |
| 9 | g11362.t4 | ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 159 | 256 | 1.3735e+01 |
| 10 | g11362.t4 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 224 | 256 | 1.2209e+01 |
| 6 | g11362.t4 | SMART | SM00248 | ANK_2a | 159 | 189 | 3.3000e+01 |
| 7 | g11362.t4 | SMART | SM00248 | ANK_2a | 190 | 220 | 9.6000e+02 |
| 5 | g11362.t4 | SMART | SM00248 | ANK_2a | 224 | 253 | 5.0000e-07 |
| 4 | g11362.t4 | SUPERFAMILY | SSF48403 | Ankyrin repeat | 159 | 254 | 0.0000e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed