General information for g11382.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Dorsal-ventral patterning protein Sog.
Parent gene
- The parent gene g11382 is located on chr_1: 15872037..15874215 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11382 | g11382.t1 | isoform | g11382.t1 | 15851255 | 15872037 |
| chr_1 | g11382 | g11382.t1 | exon | g11382.t1.exon1 | 15851255 | 15851434 |
| chr_1 | g11382 | g11382.t1 | cds | g11382.t1.CDS1 | 15851255 | 15851434 |
| chr_1 | g11382 | g11382.t1 | exon | g11382.t1.exon2 | 15851494 | 15851694 |
| chr_1 | g11382 | g11382.t1 | cds | g11382.t1.CDS2 | 15851494 | 15851694 |
| chr_1 | g11382 | g11382.t1 | exon | g11382.t1.exon3 | 15851766 | 15851941 |
| chr_1 | g11382 | g11382.t1 | cds | g11382.t1.CDS3 | 15851766 | 15851941 |
| chr_1 | g11382 | g11382.t1 | exon | g11382.t1.exon4 | 15852015 | 15852095 |
| chr_1 | g11382 | g11382.t1 | cds | g11382.t1.CDS4 | 15852015 | 15852095 |
| chr_1 | g11382 | g11382.t1 | exon | g11382.t1.exon5 | 15852165 | 15853973 |
| chr_1 | g11382 | g11382.t1 | cds | g11382.t1.CDS5 | 15852165 | 15853973 |
| chr_1 | g11382 | g11382.t1 | exon | g11382.t1.exon6 | 15854035 | 15854094 |
| chr_1 | g11382 | g11382.t1 | cds | g11382.t1.CDS6 | 15854035 | 15854094 |
| chr_1 | g11382 | g11382.t1 | exon | g11382.t1.exon7 | 15860295 | 15860427 |
| chr_1 | g11382 | g11382.t1 | cds | g11382.t1.CDS7 | 15860295 | 15860427 |
| chr_1 | g11382 | g11382.t1 | exon | g11382.t1.exon8 | 15862776 | 15862822 |
| chr_1 | g11382 | g11382.t1 | cds | g11382.t1.CDS8 | 15862776 | 15862822 |
| chr_1 | g11382 | g11382.t1 | exon | g11382.t1.exon9 | 15862882 | 15862938 |
| chr_1 | g11382 | g11382.t1 | cds | g11382.t1.CDS9 | 15862882 | 15862938 |
| chr_1 | g11382 | g11382.t1 | exon | g11382.t1.exon10 | 15871908 | 15872037 |
| chr_1 | g11382 | g11382.t1 | cds | g11382.t1.CDS10 | 15871908 | 15872037 |
| chr_1 | g11382 | g11382.t1 | TSS | g11382.t1 | NA | NA |
| chr_1 | g11382 | g11382.t1 | TTS | g11382.t1 | NA | NA |
Sequences
>g11382.t1 Gene=g11382 Length=2874
ATGGCAAGTTTCACGAGATATTATATCAAAATACTCCTTATGCTACTCATCATAGGATTA
GCAACGTGTGCACGATCAAAATCACCACTGCTTATCGAAGATGAAGGCAATCGACGAAAT
AGACCAGCAGAATGTCATTTTGGAAAAGAATTAAAAGAACTCGGATCAACATGGTTTCCT
GATTTAGGTGCACCATTCGGAAAAATGTATTGCATTAAATGCCAGTGCGTGCCAGTGCAA
AAGAAGCGAAGAATTGTTGCTCGAGTTCAATGTAGAAACATCAAAAACGAATGCCCAAAG
CCGACGTGTGAAGAGCCAATTCTGTTACCGGGTCGTTGTTGCAAAATCTGTCCAGGAGAT
TCAAGCCATCCTGACCTTTTACAAGATACACCGGTGACTCAATTAAATGAACCAGAAGAC
ATGAAACATTTTGGAGCTCTTCTTACGGGCAGAACATCAACGATGCTGAAACGAGAAGAA
ATGCTAAATAATTATCCTTCGAAAAATCCTCAGAATCTTGTTGCAACTGGTCGTTTTTCT
TTCCACAAGAAGAATTTATATTACTCATTTTATGTATCCGAGAAAGCAACCTCACGTCCA
AGTGCCATTCAGTTCATTGATAATAGTGGAAATATTTTAGAAGAGCATAGTCTAGTCACG
CTCAATTATGGTACAATTAGCAGCTATCAGAATGCCACTGGAAAGATTTGCGGCGTTTGG
AAACGTGTTCCTCGTGATTATCGACGGATTTTACGGGAAGATCAAATGAATGTTGTATTG
TTATGGGGAGATAAGCAGCAAGCTGAATTAGCATTAGCGGGTCCAATTAGCAAATATCCA
GCACTTTCTACTGAGTTATTTAGTTCTCTCTTAGAACCAGGTCCAAATACTCGACCTGAG
ATTATGGCTGGTGCTGGTGGTACAGCTATTGTGAGCACAAATAGCGGTGTTGCACCCTCC
ATCCATCTTACTTTGGTTCTCAATGGTCTCTTTGGTCCAGACGAAGTTGCTGATGTACCA
CTCAACATTCGTCTTGAAAGTGTTGAAAAGAAGCAAATTATAATTGAAGAAATTCAACGT
GTAAAAAAACCAAATCATGACATTAATGTTATTGAATTTTCTTCGCCTGTCTCTGTCTAT
GAATTGCGCATGTTGACACGAGGAAAATTACAGATTGTTGTTGAATCTAGAAAGAAACCT
GAAGCATTAAGGATTCAAGGAAGTGTTGTCACTCGTGTTGCATGTGAACTCTTTCAAACA
ATTCTATCATCTCATAATGCTGAATCAAAAACCAAATCAAGTGGTATGGCATGGCTTTAT
CTCAATAAAGAAGGCTCCCTTGTTTACAACATTCAGACACACAATCTTAATTTAGCCGAT
AATCCGCTTATAACTCTCACAAATGACAATGGTGGCAAAAAAAATACCGAGTTAGAAGAC
TTAACTTCATCATTGGATATGGATCGTGCAAATGGAATTGTTGATAAATTAGGGCCACGA
GTACTTGAACCACTGTATGCTGGAGATCTTGGTCTTAATGTTGCCACTAAAACTGAGACA
AGTCTCATTCGTGGAAAATTTTCTGTTCGACCCGTTACTGATGCTCGTGATGCTGAGGAA
CCTTATTTGATGAAAAGATTCAGCGATCAAGCACCATCGCAATCTGTTGGTATGGCATGG
ATTGCTGTAGATAATGATTGCAATTTACATTATGATGTTAGTTTGGCTGGAGTATCAAAT
CAATATCATCCCTTGCAATTATATTTAGTCGATATGCCAATGGAAGTTTATGGAGCACCT
GTTCATCGACGTTTACTTGAAGAATTCGCATCTAATCATTTAGAAGGATTTGTGCTTAGT
ATGTCAGCAGCTGATCTTGCCAAGCTTGAATCAAGTGTCAATTTCCTCGAAGTTGTATCA
AAAGAGCAAAATAATATTCTTAAAACAAAACTCAAATCAGTCAAAATTCCAAAGCAATGT
TATCCACCATCTGCAGAAAATGAAGTGGGAAACGTAGGCGATGATAATAGTAAACATCAA
TCATTTGATACAAAATGTTTCCATTCAAATCGTTTTTATGAAGATGGTGAACAATGGACA
AGTGCTATCGAGTCATGCACAGTTTGTGCATGTAATAATCGACGAGTAAAATGCGATCCC
ATAAAATGTCCACCATTAAAATGTAAAAAGGAAGAACAACAGCATAGAAAAGGCGATTGC
TGTCCTATATGTGTGGGAAAATATGTAGAAGAAACAAGCACCAATAACAACGCATCACCA
CGTGGATGTAAACTTGGTGATCAATTTTATAAAGCAGGTTCATCATGGCATCCATATTTG
CCTCCTAATGGATTCGATACGTGTGCTGTATGTACATGTGATGCGAATAACTTAGAAATC
TCTTGTCCAAGAGTTCAATGTCCTCCACTCAATTGCAGTGAAAAAGTTGCATATCGTCCC
GATAAAAAAGCATGCTGTAAGAGATGTCCAGATGTTAAACCTCCAAAAGATTTCAAAACT
AATACTGAGGAAATGAAAGATCAAGGTAGTAAAAGTGGAACACTCAATTCACCAACAGTT
ATTATGGCAAATGGAGGATGTAAATCACATATGGGATATCATACAAACGGTCAAGAATGG
CATCCTGTAATAGCATCACATGGAGAACAAAAATGTGTCAAATGTCGATGCAAGGATGGT
AACATTAATTGCGAAAAAAAGCGTTGTTCGCGTGCGTCCTGCCAGAATCAAAAGGGTGCG
AAAAAAGGACAAAGTGATGATGATTGCTGTCAATGTCGAGCAAGACGTCATCAGGCAGGA
CATCGAAAAAAACAAAAGCAGCAGCAACAACAGCAGGGAGGATCAAAGAGTTGA
>g11382.t1 Gene=g11382 Length=957
MASFTRYYIKILLMLLIIGLATCARSKSPLLIEDEGNRRNRPAECHFGKELKELGSTWFP
DLGAPFGKMYCIKCQCVPVQKKRRIVARVQCRNIKNECPKPTCEEPILLPGRCCKICPGD
SSHPDLLQDTPVTQLNEPEDMKHFGALLTGRTSTMLKREEMLNNYPSKNPQNLVATGRFS
FHKKNLYYSFYVSEKATSRPSAIQFIDNSGNILEEHSLVTLNYGTISSYQNATGKICGVW
KRVPRDYRRILREDQMNVVLLWGDKQQAELALAGPISKYPALSTELFSSLLEPGPNTRPE
IMAGAGGTAIVSTNSGVAPSIHLTLVLNGLFGPDEVADVPLNIRLESVEKKQIIIEEIQR
VKKPNHDINVIEFSSPVSVYELRMLTRGKLQIVVESRKKPEALRIQGSVVTRVACELFQT
ILSSHNAESKTKSSGMAWLYLNKEGSLVYNIQTHNLNLADNPLITLTNDNGGKKNTELED
LTSSLDMDRANGIVDKLGPRVLEPLYAGDLGLNVATKTETSLIRGKFSVRPVTDARDAEE
PYLMKRFSDQAPSQSVGMAWIAVDNDCNLHYDVSLAGVSNQYHPLQLYLVDMPMEVYGAP
VHRRLLEEFASNHLEGFVLSMSAADLAKLESSVNFLEVVSKEQNNILKTKLKSVKIPKQC
YPPSAENEVGNVGDDNSKHQSFDTKCFHSNRFYEDGEQWTSAIESCTVCACNNRRVKCDP
IKCPPLKCKKEEQQHRKGDCCPICVGKYVEETSTNNNASPRGCKLGDQFYKAGSSWHPYL
PPNGFDTCAVCTCDANNLEISCPRVQCPPLNCSEKVAYRPDKKACCKRCPDVKPPKDFKT
NTEEMKDQGSKSGTLNSPTVIMANGGCKSHMGYHTNGQEWHPVIASHGEQKCVKCRCKDG
NINCEKKRCSRASCQNQKGAKKGQSDDDCCQCRARRHQAGHRKKQKQQQQQQGGSKS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g11382.t1 | Gene3D | G3DSA:2.10.70.10 | Complement Module | 685 | 721 | 1.1E-5 |
| 29 | g11382.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 935 | 957 | - |
| 6 | g11382.t1 | PANTHER | PTHR46526 | CHORDIN | 14 | 950 | 1.7E-274 |
| 18 | g11382.t1 | PIRSF | PIRSF002496 | Chordin | 5 | 955 | 7.6E-275 |
| 3 | g11382.t1 | Pfam | PF00093 | von Willebrand factor type C domain | 45 | 117 | 6.1E-8 |
| 1 | g11382.t1 | Pfam | PF07452 | CHRD domain | 418 | 525 | 1.9E-5 |
| 4 | g11382.t1 | Pfam | PF00093 | von Willebrand factor type C domain | 686 | 744 | 4.1E-12 |
| 2 | g11382.t1 | Pfam | PF00093 | von Willebrand factor type C domain | 763 | 829 | 2.1E-10 |
| 5 | g11382.t1 | Pfam | PF00093 | von Willebrand factor type C domain | 867 | 931 | 8.7E-8 |
| 14 | g11382.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 26 | - |
| 15 | g11382.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 10 | - |
| 16 | g11382.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 11 | 21 | - |
| 17 | g11382.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 22 | 26 | - |
| 13 | g11382.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 27 | 957 | - |
| 28 | g11382.t1 | ProSitePatterns | PS01208 | VWFC domain signature. | 706 | 744 | - |
| 35 | g11382.t1 | ProSiteProfiles | PS50933 | CHRD domain profile. | 140 | 281 | 18.003 |
| 32 | g11382.t1 | ProSiteProfiles | PS50933 | CHRD domain profile. | 283 | 414 | 17.581 |
| 33 | g11382.t1 | ProSiteProfiles | PS50933 | CHRD domain profile. | 417 | 532 | 10.682 |
| 34 | g11382.t1 | ProSiteProfiles | PS50933 | CHRD domain profile. | 535 | 658 | 6.548 |
| 31 | g11382.t1 | ProSiteProfiles | PS50184 | VWFC domain profile. | 684 | 745 | 11.564 |
| 30 | g11382.t1 | ProSiteProfiles | PS50184 | VWFC domain profile. | 761 | 830 | 8.743 |
| 25 | g11382.t1 | SMART | SM00214 | vwc | 45 | 117 | 0.11 |
| 23 | g11382.t1 | SMART | SM00754 | chrd_5 | 142 | 278 | 0.081 |
| 21 | g11382.t1 | SMART | SM00754 | chrd_5 | 285 | 411 | 3.7E-7 |
| 22 | g11382.t1 | SMART | SM00754 | chrd_5 | 416 | 529 | 3.2E-9 |
| 20 | g11382.t1 | SMART | SM00754 | chrd_5 | 538 | 648 | 7.3E-4 |
| 27 | g11382.t1 | SMART | SM00214 | vwc | 686 | 744 | 1.1E-12 |
| 24 | g11382.t1 | SMART | SM00214 | vwc | 763 | 829 | 7.3E-4 |
| 26 | g11382.t1 | SMART | SM00214 | vwc | 867 | 932 | 0.17 |
| 9 | g11382.t1 | SUPERFAMILY | SSF57603 | FnI-like domain | 42 | 120 | 3.14E-6 |
| 7 | g11382.t1 | SUPERFAMILY | SSF57603 | FnI-like domain | 684 | 747 | 1.46E-12 |
| 8 | g11382.t1 | SUPERFAMILY | SSF57603 | FnI-like domain | 761 | 831 | 1.78E-8 |
| 10 | g11382.t1 | SUPERFAMILY | SSF57603 | FnI-like domain | 865 | 931 | 4.39E-5 |
| 11 | g11382.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 23 | - |
| 19 | g11382.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 24 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
| GO:0007275 | multicellular organism development | BP |
KEGG
Orthology
- This transcript has been annotated with K04657 (chordin)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
