General information for g11387.t22
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Max-like protein X.
Parent gene
- The parent gene g11387 is located on chr_1: 15893498..15894540 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11387 | g11387.t22 | isoform | g11387.t22 | 15893498 | 15894540 |
| chr_1 | g11387 | g11387.t22 | exon | g11387.t22.exon1 | 15893498 | 15894001 |
| chr_1 | g11387 | g11387.t22 | cds | g11387.t22.CDS1 | 15893498 | 15894001 |
| chr_1 | g11387 | g11387.t22 | exon | g11387.t22.exon2 | 15894061 | 15894280 |
| chr_1 | g11387 | g11387.t22 | cds | g11387.t22.CDS2 | 15894061 | 15894258 |
| chr_1 | g11387 | g11387.t22 | exon | g11387.t22.exon3 | 15894539 | 15894540 |
| chr_1 | g11387 | g11387.t22 | TSS | g11387.t22 | NA | NA |
| chr_1 | g11387 | g11387.t22 | TTS | g11387.t22 | NA | NA |
Sequences
>g11387.t22 Gene=g11387 Length=726
AATAAGAAACAGTTCACGTGAATTATGGCTGATAGCTCATTTATAAAAAATGAACCCAAT
TCTCCACATGCACACACAAGCCAACAAATAAATTCGCGATCATCCTCTGCTCATAATAGT
GAAATCGAACGTGATTCAGATTCAGATTCTGATGAAAATACAAATTCAATTAAAAGCAGT
AATTTGAGTTATAAAGAAAGAAGACGTGAAGCCCACACACAGGCTGAACAAAAAAGAAGA
GACAATATCAAGAAAGGCTATGATAGCCTCCAAGAATTGGTTCCTACTTGTAGTAATCTT
GATTCATCATCGGGATATAAATTGAGTAAAGCTACTGTGTTACAAAAATCAATTGATTAT
GTGTCATATTTAAAGCAGCAAAAAGTAAAACAAGAGGAAGAACGTGCTGCAATGCTTAAA
GAAGTGAAAGCACTGAGAATATTGCAGAAAAATTACGAGCACATGCTGCAAAATCAACAG
ACATCAAATCAACAGACAGAGGCTATCAGTGATGAAGTGAAATTTCAAGTACTTCAATCA
ATTATGGACGAATTATTTATCTCATTCGATAAATTACCAATGAATGACTTTGATTCACTC
GTTACTTCTATGTGTGAATGGTTGGAAACAAATTTCTCAAATCAATATATAAAACAAGTT
GCACAGCAAAGTCTTAATAACATCGCTAATGCTGTAGCAAGTCAAAATGAGCCTATGCAA
AACTAA
>g11387.t22 Gene=g11387 Length=233
MADSSFIKNEPNSPHAHTSQQINSRSSSAHNSEIERDSDSDSDENTNSIKSSNLSYKERR
REAHTQAEQKRRDNIKKGYDSLQELVPTCSNLDSSSGYKLSKATVLQKSIDYVSYLKQQK
VKQEEERAAMLKEVKALRILQKNYEHMLQNQQTSNQQTEAISDEVKFQVLQSIMDELFIS
FDKLPMNDFDSLVTSMCEWLETNFSNQYIKQVAQQSLNNIANAVASQNEPMQN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g11387.t22 | CDD | cd19687 | bHLHzip_Mlx | 59 | 134 | 1.77795E-38 |
| 5 | g11387.t22 | Gene3D | G3DSA:4.10.280.10 | HLH | 50 | 134 | 5.7E-20 |
| 10 | g11387.t22 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 76 | - |
| 11 | g11387.t22 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - |
| 9 | g11387.t22 | MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 44 | - |
| 8 | g11387.t22 | MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 76 | - |
| 2 | g11387.t22 | PANTHER | PTHR15741:SF25 | MAX-LIKE PROTEIN X | 6 | 224 | 1.3E-58 |
| 3 | g11387.t22 | PANTHER | PTHR15741 | BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR | 6 | 224 | 1.3E-58 |
| 1 | g11387.t22 | Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 60 | 117 | 2.5E-15 |
| 12 | g11387.t22 | ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 59 | 116 | 16.266 |
| 7 | g11387.t22 | SMART | SM00353 | finulus | 65 | 122 | 7.0E-14 |
| 4 | g11387.t22 | SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 56 | 139 | 1.7E-17 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | BP |
| GO:0008134 | transcription factor binding | MF |
| GO:0046983 | protein dimerization activity | MF |
KEGG
Orthology
- This transcript has been annotated with K09113 (MAX-like protein X)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
