Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Brain-specific angiogenesis inhibitor 1-associated protein 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11394 g11394.t2 isoform g11394.t2 15942044 15944329
chr_1 g11394 g11394.t2 exon g11394.t2.exon1 15942044 15942513
chr_1 g11394 g11394.t2 cds g11394.t2.CDS1 15942045 15942513
chr_1 g11394 g11394.t2 exon g11394.t2.exon2 15942590 15942929
chr_1 g11394 g11394.t2 cds g11394.t2.CDS2 15942590 15942929
chr_1 g11394 g11394.t2 exon g11394.t2.exon3 15943789 15943951
chr_1 g11394 g11394.t2 cds g11394.t2.CDS3 15943789 15943951
chr_1 g11394 g11394.t2 exon g11394.t2.exon4 15944285 15944329
chr_1 g11394 g11394.t2 cds g11394.t2.CDS4 15944285 15944329
chr_1 g11394 g11394.t2 TSS g11394.t2 15944776 15944776
chr_1 g11394 g11394.t2 TTS g11394.t2 NA NA

Sequences

>g11394.t2 Gene=g11394 Length=1018
ATGGATGAAGAAAAGAATGTCAAAGCTATTGATGCAATTTATAAGAACATCCTTGAAAGA
TTTAACCCTGAATCGAAGAAAATGCTTATGAATGCCAAAACATATCTGAAAGCTCTACAA
AATTCATCACAAGCATCAAAATTATTTAGTGAATCTCTCACAAAACTTGCAGAAAACGCT
CAATCGGCTCCGGGAGCCAAAGATATCGGTTCCGCACTAGCCAAAATAATTGATGTATTT
AAGTCAATTGAAGAGCAACATCAGCAAATTCTCAAAGTAATTTATGTCGATTTTATCTGT
CCTCTTGAGACAAATTTGGCGAAAGATGTCAAAGTTATTCAAGCAGAGCAGAAAAAATTT
TCTCATCAGTTAAAAATGCGAACTGATAGTTTTGATAAAGCAACAGCGGCTGTTAAGAAA
CATAGAAAGAAGAAAAATAATGCAGAACGAGAATTAAAATGTATTCAAATGCTCGAGGAA
GAAAAGAAAAATCTTGACAATTTTATGCAGCGAGAAAGTAACAATGCGCTCTTACAAGAG
CGACGTCGATATGGCTTTATTTTGGAACGATATACGGAAAGCATAGCAAAGCATTATCTA
CATTTTTTTAATAATAGCTTCGAAAGTATAAATAGCAACATTCAACGTTGGAATGAGATT
GCTGCAACACGTGAAATGATCACTACTTCACCAATGAGTGCTGAAGGCACGTTATCGAGA
AAAAACAATGGCGAGACGCTGACAATAAAGAAAGACAATGAAAATTTCAATTCCAGAAGA
AATTTGGAACGAGTGAGTCTAAGCTTAAGCGATGAAAGTGAATCGAATTTGTCAATTAAC
AACAACAACAAAAATGATTCAGAAAATAGTCGTCCGCCTCATTATTCGATGGACAAAATA
GCTTCAAATCCTAACAATCGAATTGTAGTGGCCGTCTATGGTTATACAGCGACACAAGAA
AATCAATTGAGCTTCGCTGAGGGAGATAAAATATGTTTAATTGGCGATAATATAAGTG

>g11394.t2 Gene=g11394 Length=339
MDEEKNVKAIDAIYKNILERFNPESKKMLMNAKTYLKALQNSSQASKLFSESLTKLAENA
QSAPGAKDIGSALAKIIDVFKSIEEQHQQILKVIYVDFICPLETNLAKDVKVIQAEQKKF
SHQLKMRTDSFDKATAAVKKHRKKKNNAERELKCIQMLEEEKKNLDNFMQRESNNALLQE
RRRYGFILERYTESIAKHYLHFFNNSFESINSNIQRWNEIAATREMITTSPMSAEGTLSR
KNNGETLTIKKDNENFNSRRNLERVSLSLSDESESNLSINNNNKNDSENSRPPHYSMDKI
ASNPNNRIVVAVYGYTATQENQLSFAEGDKICLIGDNIS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g11394.t2 Coils Coil Coil 131 175 -
11 g11394.t2 Gene3D G3DSA:1.20.1270.60 Arfaptin 1 220 1.8E-58
10 g11394.t2 Gene3D G3DSA:2.30.30.40 SH3 Domains 275 339 2.2E-6
8 g11394.t2 MobiDBLite mobidb-lite consensus disorder prediction 267 290 -
9 g11394.t2 MobiDBLite mobidb-lite consensus disorder prediction 267 292 -
3 g11394.t2 PANTHER PTHR14206:SF7 INSULIN RECEPTOR SUBSTRATE 53 KDA, ISOFORM A 1 243 1.2E-77
5 g11394.t2 PANTHER PTHR14206 BRAIN-SPECIFIC ANGIOGENESIS INHIBITOR 1-ASSOCIATED PROTEIN 2 1 243 1.2E-77
2 g11394.t2 PANTHER PTHR14206:SF7 INSULIN RECEPTOR SUBSTRATE 53 KDA, ISOFORM A 269 337 1.2E-77
4 g11394.t2 PANTHER PTHR14206 BRAIN-SPECIFIC ANGIOGENESIS INHIBITOR 1-ASSOCIATED PROTEIN 2 269 337 1.2E-77
1 g11394.t2 Pfam PF08397 IRSp53/MIM homology domain 14 222 2.8E-28
14 g11394.t2 ProSiteProfiles PS51338 IMD domain profile. 1 190 26.348
13 g11394.t2 ProSiteProfiles PS50002 Src homology 3 (SH3) domain profile. 304 339 13.623
6 g11394.t2 SUPERFAMILY SSF103657 BAR/IMD domain-like 2 226 1.83E-49
7 g11394.t2 SUPERFAMILY SSF50044 SH3-domain 294 337 4.14E-7

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF
GO:0007009 plasma membrane organization BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed