General information for g11394.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Brain-specific angiogenesis inhibitor 1-associated protein 2.
Parent gene
- The parent gene g11394 is located on chr_1: 15942591..15944329 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11394 | g11394.t3 | isoform | g11394.t3 | 15942591 | 15944329 |
| chr_1 | g11394 | g11394.t3 | exon | g11394.t3.exon1 | 15942591 | 15942929 |
| chr_1 | g11394 | g11394.t3 | cds | g11394.t3.CDS1 | 15942592 | 15942929 |
| chr_1 | g11394 | g11394.t3 | exon | g11394.t3.exon2 | 15943789 | 15943951 |
| chr_1 | g11394 | g11394.t3 | cds | g11394.t3.CDS2 | 15943789 | 15943951 |
| chr_1 | g11394 | g11394.t3 | exon | g11394.t3.exon3 | 15944285 | 15944329 |
| chr_1 | g11394 | g11394.t3 | cds | g11394.t3.CDS3 | 15944285 | 15944329 |
| chr_1 | g11394 | g11394.t3 | TSS | g11394.t3 | 15944776 | 15944776 |
| chr_1 | g11394 | g11394.t3 | TTS | g11394.t3 | NA | NA |
Sequences
>g11394.t3 Gene=g11394 Length=547
ATGGATGAAGAAAAGAATGTCAAAGCTATTGATGCAATTTATAAGAACATCCTTGAAAGA
TTTAACCCTGAATCGAAGAAAATGCTTATGAATGCCAAAACATATCTGAAAGCTCTACAA
AATTCATCACAAGCATCAAAATTATTTAGTGAATCTCTCACAAAACTTGCAGAAAACGCT
CAATCGGCTCCGGGAGCCAAAGATATCGGTTCCGCACTAGCCAAAATAATTGATGTATTT
AAGTCAATTGAAGAGCAACATCAGCAAATTCTCAAAGTAATTTATGTCGATTTTATCTGT
CCTCTTGAGACAAATTTGGCGAAAGATGTCAAAGTTATTCAAGCAGAGCAGAAAAAATTT
TCTCATCAGTTAAAAATGCGAACTGATAGTTTTGATAAAGCAACAGCGGCTGTTAAGAAA
CATAGAAAGAAGAAAAATAATGCAGAACGAGAATTAAAATGTATTCAAATGCTCGAGGAA
GAAAAGAAAAATCTTGACAATTTTATGCAGCGAGAAAGTAACAATGCGCTCTTACAAGAG
CGACGTC
>g11394.t3 Gene=g11394 Length=182
MDEEKNVKAIDAIYKNILERFNPESKKMLMNAKTYLKALQNSSQASKLFSESLTKLAENA
QSAPGAKDIGSALAKIIDVFKSIEEQHQQILKVIYVDFICPLETNLAKDVKVIQAEQKKF
SHQLKMRTDSFDKATAAVKKHRKKKNNAERELKCIQMLEEEKKNLDNFMQRESNNALLQE
RR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g11394.t3 | Coils | Coil | Coil | 131 | 175 | - |
| 5 | g11394.t3 | Gene3D | G3DSA:1.20.1270.60 | Arfaptin | 1 | 182 | 1.7E-46 |
| 2 | g11394.t3 | PANTHER | PTHR14206:SF7 | INSULIN RECEPTOR SUBSTRATE 53 KDA, ISOFORM A | 1 | 182 | 1.1E-49 |
| 3 | g11394.t3 | PANTHER | PTHR14206 | BRAIN-SPECIFIC ANGIOGENESIS INHIBITOR 1-ASSOCIATED PROTEIN 2 | 1 | 182 | 1.1E-49 |
| 1 | g11394.t3 | Pfam | PF08397 | IRSp53/MIM homology domain | 14 | 182 | 1.0E-22 |
| 7 | g11394.t3 | ProSiteProfiles | PS51338 | IMD domain profile. | 1 | 182 | 29.895 |
| 4 | g11394.t3 | SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 2 | 182 | 1.03E-41 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0007009 | plasma membrane organization | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed