General information for g11395.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Laminin subunit beta-1.
Parent gene
- The parent gene g11395 is located on chr_1: 15951601..15952952 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11395 | g11395.t1 | TTS | g11395.t1 | 15944983 | 15944983 |
| chr_1 | g11395 | g11395.t1 | isoform | g11395.t1 | 15945456 | 15952101 |
| chr_1 | g11395 | g11395.t1 | exon | g11395.t1.exon1 | 15945456 | 15945595 |
| chr_1 | g11395 | g11395.t1 | cds | g11395.t1.CDS1 | 15945456 | 15945595 |
| chr_1 | g11395 | g11395.t1 | exon | g11395.t1.exon2 | 15945683 | 15945827 |
| chr_1 | g11395 | g11395.t1 | cds | g11395.t1.CDS2 | 15945683 | 15945827 |
| chr_1 | g11395 | g11395.t1 | exon | g11395.t1.exon3 | 15945922 | 15946110 |
| chr_1 | g11395 | g11395.t1 | cds | g11395.t1.CDS3 | 15945922 | 15946110 |
| chr_1 | g11395 | g11395.t1 | exon | g11395.t1.exon4 | 15946185 | 15946253 |
| chr_1 | g11395 | g11395.t1 | cds | g11395.t1.CDS4 | 15946185 | 15946253 |
| chr_1 | g11395 | g11395.t1 | exon | g11395.t1.exon5 | 15946316 | 15946388 |
| chr_1 | g11395 | g11395.t1 | cds | g11395.t1.CDS5 | 15946316 | 15946388 |
| chr_1 | g11395 | g11395.t1 | exon | g11395.t1.exon6 | 15946456 | 15947782 |
| chr_1 | g11395 | g11395.t1 | cds | g11395.t1.CDS6 | 15946456 | 15947782 |
| chr_1 | g11395 | g11395.t1 | exon | g11395.t1.exon7 | 15947850 | 15947946 |
| chr_1 | g11395 | g11395.t1 | cds | g11395.t1.CDS7 | 15947850 | 15947946 |
| chr_1 | g11395 | g11395.t1 | exon | g11395.t1.exon8 | 15948010 | 15948206 |
| chr_1 | g11395 | g11395.t1 | cds | g11395.t1.CDS8 | 15948010 | 15948206 |
| chr_1 | g11395 | g11395.t1 | exon | g11395.t1.exon9 | 15948264 | 15949025 |
| chr_1 | g11395 | g11395.t1 | cds | g11395.t1.CDS9 | 15948264 | 15949025 |
| chr_1 | g11395 | g11395.t1 | exon | g11395.t1.exon10 | 15949274 | 15949466 |
| chr_1 | g11395 | g11395.t1 | cds | g11395.t1.CDS10 | 15949274 | 15949466 |
| chr_1 | g11395 | g11395.t1 | exon | g11395.t1.exon11 | 15949528 | 15949935 |
| chr_1 | g11395 | g11395.t1 | cds | g11395.t1.CDS11 | 15949528 | 15949935 |
| chr_1 | g11395 | g11395.t1 | exon | g11395.t1.exon12 | 15949995 | 15950707 |
| chr_1 | g11395 | g11395.t1 | cds | g11395.t1.CDS12 | 15949995 | 15950707 |
| chr_1 | g11395 | g11395.t1 | exon | g11395.t1.exon13 | 15950770 | 15950854 |
| chr_1 | g11395 | g11395.t1 | cds | g11395.t1.CDS13 | 15950770 | 15950854 |
| chr_1 | g11395 | g11395.t1 | exon | g11395.t1.exon14 | 15950917 | 15951517 |
| chr_1 | g11395 | g11395.t1 | cds | g11395.t1.CDS14 | 15950917 | 15951517 |
| chr_1 | g11395 | g11395.t1 | exon | g11395.t1.exon15 | 15951587 | 15951848 |
| chr_1 | g11395 | g11395.t1 | cds | g11395.t1.CDS15 | 15951587 | 15951848 |
| chr_1 | g11395 | g11395.t1 | exon | g11395.t1.exon16 | 15951901 | 15951975 |
| chr_1 | g11395 | g11395.t1 | cds | g11395.t1.CDS16 | 15951901 | 15951975 |
| chr_1 | g11395 | g11395.t1 | exon | g11395.t1.exon17 | 15952038 | 15952101 |
| chr_1 | g11395 | g11395.t1 | cds | g11395.t1.CDS17 | 15952038 | 15952101 |
| chr_1 | g11395 | g11395.t1 | TSS | g11395.t1 | 15952963 | 15952963 |
Sequences
>g11395.t1 Gene=g11395 Length=5400
ATGGCCAGTTTGTCGTTTGATGTCAAACAGATTTCTTTAGTTATCTTAATCTTCTTTATG
ATAAATATTGCCCTATGTCAAAATTCACAATTTCAACCACAACCTCGAATTAGACACCAA
AGACCGGGTATTTCAAGAACTCGACCGGTTCAGAGAACAAATCCAAGATTGCACCCATGT
GAACAAAGCAGTTGTTATCCTGCGACAGGTAATCTTCTCATTGGCAGAGAAAACCGTCTA
ACAGCTTCATCAACTTGTGGTTTACATGAGCCTGAACGTTTTTGCATTGTGTCACATTTA
GAAGACAAAAAATGTTTCCTTTGTGAAACCAATCAATATACAGAAAATAATTCGCAGCTT
AATCATCGTGTTGGTCAAATAATTTACAAATTTAGACCAGGAACACTGGAAAATACTTGG
TGGCAATCTGAGAATGGCAAAGAAAATGTCACAATTCAATTGGATCTCGAAGCAGAGTTT
CATTTTACTCATTTGATTATCGTCTTTGCTACTTTCCGTCCTGCAGCCATGTTGATTGAA
CGGTCATATGATTTTGGTAAAAGTTGGCATGTTTATCGTTATTTTGCATCAAACTGTGCC
GAATCGTTTCCATTTGCGTTGCGAGAAAGTGAATCGAAAAATATTACTGATGTCACATGC
GATCAACGCTACTCAAGTGTTGAGCCGTCAAAAAATGGTGAAGTCATTTTCCGAGTACTC
CCACCAAGCATGAATATCGCAAATCCTTATGCTGATCATGTACAAAATATGCTGAAAATG
ACAAATTTGAGAATCAATTTTACAAAACTGCATTCGTTAGGTGACACACTTTTAGATGAC
CGATCAGAAATACAAGAGAAATACTACTATGCAATTTCCAATATGGTCGTTCGTGGATCA
TGTTCGTGCTATGGACATGCATCTCGTTGCTTACCGCTGGACGGTTTTGAAACACAGAAC
GATATGGTTCATGGAAGATGTGAATGTACACATCATACCAAGGGATTAAACTGTGAATTT
TGTGAAGATTTCTTCAATGATCTACCATGGAAACCAGCGCTTGGAAAGCAAACTAATGCT
TGCAAAAAATGTAATTGTAATAATCATGCGACAAGTTGTCATTTTGATCAAGCAGTATAT
GAACATTCTGGAAGAGTAAGCGGAGGAGTTTGTGATAATTGTGAACATAATACTCAAGGT
CAACATTGTGAACAATGTATTCCATTCTTCTATCGTGATCCGAATGAAGATATTCAGAGT
CCGTATGCTTGCAAACCTTGTGATTGTGATCCATTAGGTTCACTCGATGATGGAATTTGT
GATTCAGTCTCAGATGCTGAAAGTGAAGTTGAAGCCGGTGCATGTCATTGCAAGAAAAAT
GTAAAAGGACGACGATGTGATGTTTGTAAGGAAGGTTTTTGGAATTTAACAGCTGAAAAT
CCAGATGGTTGTGAAGAATGCACATGTAATATCTTGGGAACAGTCAATAATTTGGGATGC
AATTTTTACACTGGCGAGTGTACATGTAAACGATTGGTTATGGGTAAAGATTGTAATCAA
TGTATGCCAGAAACTTATGGATTATCAGAAAGCAGAGATGGTTGCACACCTTGTGATTGT
GATCCTGGTGGTTCACTTGACAATAATTGCGATGTTATCACAGGAGAATGTAAATGTCGT
CCATATATGCAAGGCAGAAACTGCAGTGAACCAAAACAGAATCATTTCATTCCAAATCTT
CACATTATTGTTGAAGCCGAAGGGCCAAATGCCATTTGTGAAACACAATCATCATATAAT
AATTGTTCAGTAGTTATTCGTGAACAATATCCAGATAGGCAAACTTTTACTGGACCAGGC
TTTTTGAAAGTTTATGAAGGCGCCGATATTAGTTTTACAGTTGATAATGTGCCAAAAACA
ATGAACTATGATGTTCAATTGCGATATTTGCCACAACAACGTTCAAGTTGGGAAGACATT
CGTGTTAGTCTCATAAGACCAGATGCTGTTGAGCATGATAGTGGCTGTTATAATATAAAT
CCATTGGAAGAACAAGAAAAGACTTTACGTTTCAATGAATATGAATCAAGTGTTATTGCT
CTCTCTGATCTCTGTTTAGAGGAAGGGAAAACTTATAAATTTATTGTTTCGTTCCATCGA
CAAAATATTTATGAACCGAATACAAAAGCACAAATTCTCGTTGACTCTCTAACATTGGTA
CCTCGTATTGATGTTACAACCATTTTCTCTGGCTCATCAGCTGGTTCACTTCGAAGACAG
GACTTTGAATATTATCGCTGTAATGATTCATATTATGACATTGCATTGACTGCACATGCT
GATCCAAAATGTCAGGAACTTATAAATATGGCTGCAACACTTGTTTATAACGGTGCTACA
CCTTGTGATTGCAATCCGACTGGATCATTCAGTAAGAAATGTGAAGAACATGGAGGATAT
TGCAAATGTAAGCCAAATGTAATTGGACGTCAATGTGATCAATGCGCACCGGGTACTTAT
GGCTTCAGTCCAAACGGTTGTCAGGCATGTGATTGCGATAGTATTGGATCAAAAGATAAT
GAATGTCATTTAACTACGGGTCAGTGCAATTGTCAACCAAACACATACGGTCGAGAATGT
AATCAATGTCAAATTGGCTACTGGAACTTCCCTGATTGTCAGCAATGTAATTGCAATGGT
CATGCAACTGCTTGTGATGCAAAGACTGGAGAGTGCTTGAATTGTCAAGATTATACGACA
GGATTTCATTGCGATCAATGTATTGCTGGATATTATGGTGATCCATTACTTGGAAGTGAA
ATTGGCTGCAGACCATGTCGCTGTCCAGATACCATTGCATCAGGTCACTCACATGCTTCG
CAATGTTTACTCATCTCAAATAATGATGTTGTTTGCTATTGTGAACCTGGTTATGCTGGA
GCAAAATGTGATATTTGTGACAATAACTATTACGGAAATCCCGATAAACCTGGAGGTGAA
TGCAAACAATGTAATTGTACAAACAACATTGATTTGAGTCGATCAGGAAATTGTGATGCA
AGAACCGGAAAATGCTTGCAATGTTTGTATGACACGGACGGAGATCATTGTGAACATTGT
CGTGATGGATTCTATGGAGATGCTTCACGACAAGATTGCAGAGAGTGTGATTGTGACGTA
CTTGGCACCATAGCAGGAAAGTTTTGTGATCGTAAAACTGGACAATGTCCATGTTTGCCA
AATGTTGTTGGTGCTCGTTGTGATCAATGTGCCAGTAATCATTGGAAAATTGCAAGTGGA
GAAGGATGCGAACCATGCAATTGCGATGAAACTGGTTCTCTAAGTGATCAGTGTAATCCT
TATGATGGTCAATGTGAATGCAAACCTGGTTTCGGTGGTAGAGCTTGCGATCAATGTGAA
ACAAACTTCTGGGGTGATCCTAATATTGAATGCAAACCTTGTGATTGTGATCGATATGGT
TCATCATCTTATCAATGTGATCGTGTAACTGGTCAATGTAAATGTATAAAAGGAATTGGT
GGTTATAAATGTGATGAATGCGATCGTGGTTATCTTGGCGAAGCGCCGTATTGTTCACCT
TGCGGTGAATGCTTTGACAATTGGGATGATATTCTTGATGAATTAAAGAAGGAAACTGAT
CAAATTATCGAAAAGGCCAAGTTAATTAAAACTCAGGGAGCGACAGGTGCATACACTAAA
GAATTTGAAGATGTTGAGAAAAAGATTGCAACTATCAAGGGAATTCTAGAAAGCACTACT
GTCAGTGGACGAGACATTAAAAAAATTAATGAGAAAGTCGATAAATTGCGTGCACATTTG
GAGAAATCAGAGGCAAGCTTAAAACAAACCGATGCCGATTTGGATAAACTCAATGAAGAA
ATGAATTTGGCTGGTGTCGAAATTTCTAATTTGGAAGAAAAGAGCGAAAAAATCAAAGCG
CTTGCGAATGCATTGAAAGAAAATGCCACAACATTGCAAGAAGCTAACATTGAGGGAGCA
TTGAATTTAACACGAGATGCATGGACTCGTGTACAAGGATTATCAGATATTTATAAAGAA
GTTACTGATTTAAATTCAGAAGCTGAACGTCAATGCAAGAGAATTGAGAATCTTATTAGT
CGACAACTTGAAAATGAAGGAATTTTGGCAGCAAATGATAAGCAAATTGAAGAACTTCAA
ACTAGCTTGAACGAATTAATTTCTGAAATTCCAGATCTCAATGAGCAAATTTGTGACAAA
CGTGGTGAACCATGCGATGCTCTTTGTGGTGGTGCAGGCTGTGGTAAATGTGGTGGCATT
TCATGTGAAAAAGGTGCGCTAACAAAAGCAGAAACAGCACTACAATATGCCAAAGACACA
GAGAAAATTATAAAAGAGAAAGATCAACAAGCAGAAGAGCTCATAAGAAAGGTATCGCAT
GCTAAAACTGAGGCAGTTGAGGCTCATAAAAAGGCAAAAGAAACATTTGACAAGGTTGAA
GAAACATATAATTCTACAGAAACATTACTCAACGAGGGACGAGAATTAATTACAAATTTG
ACAAATATTATTGCAAATAACACTGCCTCGCCTGTGGAAATTAAAGATATTGCCGAAAAT
ATTTTGAAGCTTGATTTGCACTTGGATCCATCAGAAATTAAACATTTGGCTAATAACATT
GATAAAACTGTTGCTGAATTAGAGAATGTCGATGATATTATTGATAATACTCGTCATGAT
TTAGAAATGGTTGAAAAACTTAAAACAAGTGCCACTGAAGCACAAAAGCGTGCTAATGAT
GTTTTAAAGAGAGCGACTGAAGTTAGTAAAGCATTAGAAGAAGCCGAAGCGTCTCAGAAT
GCTGCTAGAGTTGCGATTAAAAAGGCAAACGATGACATAGCATCTGCAAAATCTGATTTA
GAAGATATAAACGATGATGCAACAAAAGCTAGAGCTAGTGTAGATGAAACGGCAGCCGCT
GTTGATGCTTTACAAACAAAATTAAATAAGTTACAGAGGAAGTTTTTGAAGAACTCACAT
GATGCAAAAGAGGTGAAGACTCAAGCAGATGTAGCAAAGGATCTTTCATCTGTAACACAC
GAGAAAGCGAAAAAGTTAAAGAATCAATACAAATACGCTAATGACACTTTGAATTCAAAA
GCTCAATCTACAGAGTATGCACGAAACAAAGCACAACAATTATTGCAGCGAGCTTCAAAA
ATAACAGTCGACACGAACAATAAATTGAAGGAATTGCGAGATATGGTGAGCATAACAACA
TCAAATGACGACGAGTTGGTAGAAATGGAACGAAAAATTTTGAGACTTAACGGCGAAATC
GATGTCTATATACAGCGTATCAGAGACCATGCCGATCGTTACCGAACTTGCACTTCTTGA
>g11395.t1 Gene=g11395 Length=1799
MASLSFDVKQISLVILIFFMINIALCQNSQFQPQPRIRHQRPGISRTRPVQRTNPRLHPC
EQSSCYPATGNLLIGRENRLTASSTCGLHEPERFCIVSHLEDKKCFLCETNQYTENNSQL
NHRVGQIIYKFRPGTLENTWWQSENGKENVTIQLDLEAEFHFTHLIIVFATFRPAAMLIE
RSYDFGKSWHVYRYFASNCAESFPFALRESESKNITDVTCDQRYSSVEPSKNGEVIFRVL
PPSMNIANPYADHVQNMLKMTNLRINFTKLHSLGDTLLDDRSEIQEKYYYAISNMVVRGS
CSCYGHASRCLPLDGFETQNDMVHGRCECTHHTKGLNCEFCEDFFNDLPWKPALGKQTNA
CKKCNCNNHATSCHFDQAVYEHSGRVSGGVCDNCEHNTQGQHCEQCIPFFYRDPNEDIQS
PYACKPCDCDPLGSLDDGICDSVSDAESEVEAGACHCKKNVKGRRCDVCKEGFWNLTAEN
PDGCEECTCNILGTVNNLGCNFYTGECTCKRLVMGKDCNQCMPETYGLSESRDGCTPCDC
DPGGSLDNNCDVITGECKCRPYMQGRNCSEPKQNHFIPNLHIIVEAEGPNAICETQSSYN
NCSVVIREQYPDRQTFTGPGFLKVYEGADISFTVDNVPKTMNYDVQLRYLPQQRSSWEDI
RVSLIRPDAVEHDSGCYNINPLEEQEKTLRFNEYESSVIALSDLCLEEGKTYKFIVSFHR
QNIYEPNTKAQILVDSLTLVPRIDVTTIFSGSSAGSLRRQDFEYYRCNDSYYDIALTAHA
DPKCQELINMAATLVYNGATPCDCNPTGSFSKKCEEHGGYCKCKPNVIGRQCDQCAPGTY
GFSPNGCQACDCDSIGSKDNECHLTTGQCNCQPNTYGRECNQCQIGYWNFPDCQQCNCNG
HATACDAKTGECLNCQDYTTGFHCDQCIAGYYGDPLLGSEIGCRPCRCPDTIASGHSHAS
QCLLISNNDVVCYCEPGYAGAKCDICDNNYYGNPDKPGGECKQCNCTNNIDLSRSGNCDA
RTGKCLQCLYDTDGDHCEHCRDGFYGDASRQDCRECDCDVLGTIAGKFCDRKTGQCPCLP
NVVGARCDQCASNHWKIASGEGCEPCNCDETGSLSDQCNPYDGQCECKPGFGGRACDQCE
TNFWGDPNIECKPCDCDRYGSSSYQCDRVTGQCKCIKGIGGYKCDECDRGYLGEAPYCSP
CGECFDNWDDILDELKKETDQIIEKAKLIKTQGATGAYTKEFEDVEKKIATIKGILESTT
VSGRDIKKINEKVDKLRAHLEKSEASLKQTDADLDKLNEEMNLAGVEISNLEEKSEKIKA
LANALKENATTLQEANIEGALNLTRDAWTRVQGLSDIYKEVTDLNSEAERQCKRIENLIS
RQLENEGILAANDKQIEELQTSLNELISEIPDLNEQICDKRGEPCDALCGGAGCGKCGGI
SCEKGALTKAETALQYAKDTEKIIKEKDQQAEELIRKVSHAKTEAVEAHKKAKETFDKVE
ETYNSTETLLNEGRELITNLTNIIANNTASPVEIKDIAENILKLDLHLDPSEIKHLANNI
DKTVAELENVDDIIDNTRHDLEMVEKLKTSATEAQKRANDVLKRATEVSKALEEAEASQN
AARVAIKKANDDIASAKSDLEDINDDATKARASVDETAAAVDALQTKLNKLQRKFLKNSH
DAKEVKTQADVAKDLSSVTHEKAKKLKNQYKYANDTLNSKAQSTEYARNKAQQLLQRASK
ITVDTNNKLKELRDMVSITTSNDDELVEMERKILRLNGEIDVYIQRIRDHADRYRTCTS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 73 | g11395.t1 | CDD | cd00055 | EGF_Lam | 300 | 352 | 2.6085E-6 |
| 71 | g11395.t1 | CDD | cd00055 | EGF_Lam | 364 | 414 | 2.79413E-6 |
| 69 | g11395.t1 | CDD | cd00055 | EGF_Lam | 426 | 485 | 1.47112E-9 |
| 65 | g11395.t1 | CDD | cd00055 | EGF_Lam | 487 | 536 | 3.99337E-8 |
| 64 | g11395.t1 | CDD | cd00055 | EGF_Lam | 537 | 576 | 2.40025E-9 |
| 63 | g11395.t1 | CDD | cd00055 | EGF_Lam | 801 | 848 | 2.51222E-14 |
| 75 | g11395.t1 | CDD | cd00055 | EGF_Lam | 849 | 892 | 1.18993E-12 |
| 67 | g11395.t1 | CDD | cd00055 | EGF_Lam | 896 | 944 | 1.33392E-9 |
| 74 | g11395.t1 | CDD | cd00055 | EGF_Lam | 945 | 999 | 5.2267E-5 |
| 68 | g11395.t1 | CDD | cd00055 | EGF_Lam | 1004 | 1054 | 1.09943E-6 |
| 66 | g11395.t1 | CDD | cd00055 | EGF_Lam | 1056 | 1104 | 3.19537E-10 |
| 72 | g11395.t1 | CDD | cd00055 | EGF_Lam | 1105 | 1147 | 3.64068E-14 |
| 70 | g11395.t1 | CDD | cd00055 | EGF_Lam | 1153 | 1201 | 3.3556E-10 |
| 57 | g11395.t1 | Coils | Coil | Coil | 1212 | 1232 | - |
| 53 | g11395.t1 | Coils | Coil | Coil | 1266 | 1338 | - |
| 54 | g11395.t1 | Coils | Coil | Coil | 1358 | 1385 | - |
| 50 | g11395.t1 | Coils | Coil | Coil | 1389 | 1416 | - |
| 52 | g11395.t1 | Coils | Coil | Coil | 1457 | 1484 | - |
| 49 | g11395.t1 | Coils | Coil | Coil | 1584 | 1604 | - |
| 55 | g11395.t1 | Coils | Coil | Coil | 1612 | 1646 | - |
| 56 | g11395.t1 | Coils | Coil | Coil | 1654 | 1674 | - |
| 51 | g11395.t1 | Coils | Coil | Coil | 1766 | 1786 | - |
| 36 | g11395.t1 | Gene3D | G3DSA:2.60.120.1490 | - | 50 | 303 | 2.3E-93 |
| 48 | g11395.t1 | Gene3D | G3DSA:2.170.300.10 | - | 304 | 418 | 7.0E-41 |
| 41 | g11395.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 425 | 485 | 2.3E-15 |
| 47 | g11395.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 486 | 536 | 5.5E-11 |
| 39 | g11395.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 537 | 581 | 7.8E-9 |
| 43 | g11395.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 800 | 848 | 6.6E-14 |
| 45 | g11395.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 849 | 896 | 2.3E-10 |
| 38 | g11395.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 897 | 943 | 3.9E-13 |
| 44 | g11395.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 946 | 1003 | 3.0E-10 |
| 37 | g11395.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 1004 | 1055 | 1.9E-15 |
| 42 | g11395.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 1056 | 1104 | 2.3E-17 |
| 46 | g11395.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 1105 | 1152 | 5.3E-11 |
| 40 | g11395.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 1153 | 1202 | 1.1E-7 |
| 15 | g11395.t1 | PANTHER | PTHR10574 | NETRIN/LAMININ-RELATED | 58 | 1797 | 0.0 |
| 16 | g11395.t1 | PANTHER | PTHR10574:SF233 | LAMININ SUBUNIT BETA-1 | 58 | 1797 | 0.0 |
| 20 | g11395.t1 | PRINTS | PR00011 | Type III EGF-like signature | 1069 | 1087 | 2.3E-30 |
| 18 | g11395.t1 | PRINTS | PR00011 | Type III EGF-like signature | 1118 | 1136 | 2.3E-30 |
| 17 | g11395.t1 | PRINTS | PR00011 | Type III EGF-like signature | 1137 | 1165 | 2.3E-30 |
| 19 | g11395.t1 | PRINTS | PR00011 | Type III EGF-like signature | 1166 | 1184 | 2.3E-30 |
| 1 | g11395.t1 | Pfam | PF00055 | Laminin N-terminal (Domain VI) | 65 | 299 | 4.0E-77 |
| 11 | g11395.t1 | Pfam | PF00053 | Laminin EGF domain | 301 | 352 | 8.4E-5 |
| 6 | g11395.t1 | Pfam | PF00053 | Laminin EGF domain | 364 | 424 | 2.0E-8 |
| 3 | g11395.t1 | Pfam | PF00053 | Laminin EGF domain | 427 | 484 | 3.5E-11 |
| 14 | g11395.t1 | Pfam | PF00053 | Laminin EGF domain | 487 | 535 | 4.3E-8 |
| 8 | g11395.t1 | Pfam | PF00053 | Laminin EGF domain | 538 | 576 | 2.5E-7 |
| 4 | g11395.t1 | Pfam | PF00053 | Laminin EGF domain | 802 | 847 | 2.5E-11 |
| 9 | g11395.t1 | Pfam | PF00053 | Laminin EGF domain | 850 | 892 | 4.0E-10 |
| 2 | g11395.t1 | Pfam | PF00053 | Laminin EGF domain | 896 | 943 | 5.2E-9 |
| 10 | g11395.t1 | Pfam | PF00053 | Laminin EGF domain | 946 | 1001 | 6.0E-6 |
| 13 | g11395.t1 | Pfam | PF00053 | Laminin EGF domain | 1004 | 1053 | 1.9E-7 |
| 12 | g11395.t1 | Pfam | PF00053 | Laminin EGF domain | 1056 | 1103 | 5.0E-10 |
| 7 | g11395.t1 | Pfam | PF00053 | Laminin EGF domain | 1106 | 1148 | 3.6E-11 |
| 5 | g11395.t1 | Pfam | PF00053 | Laminin EGF domain | 1154 | 1195 | 1.1E-6 |
| 59 | g11395.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 26 | - |
| 60 | g11395.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 10 | - |
| 61 | g11395.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 11 | 21 | - |
| 62 | g11395.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 22 | 26 | - |
| 58 | g11395.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 27 | 1799 | - |
| 103 | g11395.t1 | ProSitePatterns | PS01248 | Laminin-type EGF-like (LE) domain signature. | 507 | 540 | - |
| 101 | g11395.t1 | ProSitePatterns | PS01248 | Laminin-type EGF-like (LE) domain signature. | 821 | 852 | - |
| 99 | g11395.t1 | ProSitePatterns | PS01248 | Laminin-type EGF-like (LE) domain signature. | 912 | 948 | - |
| 102 | g11395.t1 | ProSitePatterns | PS01248 | Laminin-type EGF-like (LE) domain signature. | 1076 | 1108 | - |
| 100 | g11395.t1 | ProSitePatterns | PS01248 | Laminin-type EGF-like (LE) domain signature. | 1173 | 1204 | - |
| 118 | g11395.t1 | ProSiteProfiles | PS51117 | Laminin N-terminal domain profile. | 61 | 300 | 39.936 |
| 115 | g11395.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 301 | 363 | 11.55 |
| 114 | g11395.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 364 | 426 | 13.625 |
| 108 | g11395.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 427 | 486 | 18.119 |
| 106 | g11395.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 487 | 537 | 15.282 |
| 107 | g11395.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 538 | 574 | 7.989 |
| 117 | g11395.t1 | ProSiteProfiles | PS51116 | Laminin IV type A domain profile. | 576 | 796 | 44.916 |
| 116 | g11395.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 802 | 849 | 22.651 |
| 105 | g11395.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 850 | 895 | 18.69 |
| 113 | g11395.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 896 | 945 | 18.633 |
| 111 | g11395.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 946 | 1003 | 10.75 |
| 104 | g11395.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 1004 | 1055 | 11.683 |
| 109 | g11395.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 1056 | 1105 | 17.91 |
| 110 | g11395.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 1106 | 1153 | 20.556 |
| 112 | g11395.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 1154 | 1200 | 15.815 |
| 98 | g11395.t1 | SMART | SM00136 | LamNT_2 | 59 | 299 | 1.9E-103 |
| 81 | g11395.t1 | SMART | SM00180 | lamegf_3 | 301 | 361 | 8.0E-5 |
| 94 | g11395.t1 | SMART | SM00181 | egf_5 | 360 | 404 | 110.0 |
| 82 | g11395.t1 | SMART | SM00180 | lamegf_3 | 364 | 424 | 2.2E-9 |
| 79 | g11395.t1 | SMART | SM00180 | lamegf_3 | 427 | 484 | 6.0E-13 |
| 92 | g11395.t1 | SMART | SM00181 | egf_5 | 439 | 485 | 180.0 |
| 89 | g11395.t1 | SMART | SM00180 | lamegf_3 | 487 | 535 | 2.3E-8 |
| 78 | g11395.t1 | SMART | SM00180 | lamegf_3 | 538 | 602 | 2.3E-5 |
| 91 | g11395.t1 | SMART | SM00181 | egf_5 | 801 | 848 | 66.0 |
| 80 | g11395.t1 | SMART | SM00180 | lamegf_3 | 802 | 847 | 1.7E-13 |
| 83 | g11395.t1 | SMART | SM00180 | lamegf_3 | 850 | 893 | 1.4E-12 |
| 95 | g11395.t1 | SMART | SM00181 | egf_5 | 861 | 894 | 170.0 |
| 77 | g11395.t1 | SMART | SM00180 | lamegf_3 | 896 | 943 | 1.4E-11 |
| 93 | g11395.t1 | SMART | SM00181 | egf_5 | 904 | 944 | 34.0 |
| 90 | g11395.t1 | SMART | SM00181 | egf_5 | 945 | 984 | 120.0 |
| 85 | g11395.t1 | SMART | SM00180 | lamegf_3 | 946 | 1001 | 1.4E-4 |
| 88 | g11395.t1 | SMART | SM00180 | lamegf_3 | 1004 | 1053 | 2.6E-5 |
| 97 | g11395.t1 | SMART | SM00181 | egf_5 | 1017 | 1054 | 32.0 |
| 87 | g11395.t1 | SMART | SM00180 | lamegf_3 | 1056 | 1103 | 4.8E-15 |
| 86 | g11395.t1 | SMART | SM00180 | lamegf_3 | 1106 | 1151 | 1.5E-10 |
| 84 | g11395.t1 | SMART | SM00180 | lamegf_3 | 1154 | 1198 | 1.4E-5 |
| 96 | g11395.t1 | SMART | SM00181 | egf_5 | 1165 | 1199 | 32.0 |
| 31 | g11395.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 301 | 366 | 2.51E-7 |
| 26 | g11395.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 364 | 429 | 1.48E-9 |
| 23 | g11395.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 452 | 489 | 9.49E-7 |
| 27 | g11395.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 487 | 530 | 4.74E-6 |
| 29 | g11395.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 538 | 577 | 4.74E-7 |
| 28 | g11395.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 802 | 844 | 2.79E-8 |
| 24 | g11395.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 850 | 898 | 7.25E-10 |
| 32 | g11395.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 896 | 948 | 1.26E-9 |
| 25 | g11395.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 956 | 1006 | 1.56E-7 |
| 22 | g11395.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 1004 | 1055 | 4.19E-8 |
| 34 | g11395.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 1056 | 1103 | 1.95E-8 |
| 30 | g11395.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 1106 | 1148 | 1.87E-8 |
| 33 | g11395.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 1154 | 1201 | 2.37E-5 |
| 21 | g11395.t1 | SUPERFAMILY | SSF58104 | Methyl-accepting chemotaxis protein (MCP) signaling domain | 1393 | 1673 | 4.32E-5 |
| 35 | g11395.t1 | SignalP_EUK | SignalP-TM | SignalP-TM | 1 | 26 | - |
| 76 | g11395.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 31 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K05636 (laminin, beta 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
