General information for g11397.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Proton-coupled amino acid transporter-like protein CG1139.
Parent gene
- The parent gene g11397 is located on chr_1: 15958605..15963326 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11397 | g11397.t1 | TSS | g11397.t1 | 15955910 | 15955910 |
| chr_1 | g11397 | g11397.t1 | isoform | g11397.t1 | 15956515 | 15958605 |
| chr_1 | g11397 | g11397.t1 | exon | g11397.t1.exon1 | 15956515 | 15956576 |
| chr_1 | g11397 | g11397.t1 | cds | g11397.t1.CDS1 | 15956515 | 15956576 |
| chr_1 | g11397 | g11397.t1 | exon | g11397.t1.exon2 | 15956645 | 15956802 |
| chr_1 | g11397 | g11397.t1 | cds | g11397.t1.CDS2 | 15956645 | 15956802 |
| chr_1 | g11397 | g11397.t1 | exon | g11397.t1.exon3 | 15956867 | 15957028 |
| chr_1 | g11397 | g11397.t1 | cds | g11397.t1.CDS3 | 15956867 | 15957028 |
| chr_1 | g11397 | g11397.t1 | exon | g11397.t1.exon4 | 15957092 | 15957155 |
| chr_1 | g11397 | g11397.t1 | cds | g11397.t1.CDS4 | 15957092 | 15957155 |
| chr_1 | g11397 | g11397.t1 | exon | g11397.t1.exon5 | 15957268 | 15957436 |
| chr_1 | g11397 | g11397.t1 | cds | g11397.t1.CDS5 | 15957268 | 15957436 |
| chr_1 | g11397 | g11397.t1 | exon | g11397.t1.exon6 | 15957513 | 15957690 |
| chr_1 | g11397 | g11397.t1 | cds | g11397.t1.CDS6 | 15957513 | 15957690 |
| chr_1 | g11397 | g11397.t1 | exon | g11397.t1.exon7 | 15957757 | 15957813 |
| chr_1 | g11397 | g11397.t1 | cds | g11397.t1.CDS7 | 15957757 | 15957813 |
| chr_1 | g11397 | g11397.t1 | exon | g11397.t1.exon8 | 15957876 | 15958011 |
| chr_1 | g11397 | g11397.t1 | cds | g11397.t1.CDS8 | 15957876 | 15958011 |
| chr_1 | g11397 | g11397.t1 | exon | g11397.t1.exon9 | 15958074 | 15958243 |
| chr_1 | g11397 | g11397.t1 | cds | g11397.t1.CDS9 | 15958074 | 15958243 |
| chr_1 | g11397 | g11397.t1 | exon | g11397.t1.exon10 | 15958308 | 15958492 |
| chr_1 | g11397 | g11397.t1 | cds | g11397.t1.CDS10 | 15958308 | 15958492 |
| chr_1 | g11397 | g11397.t1 | exon | g11397.t1.exon11 | 15958546 | 15958605 |
| chr_1 | g11397 | g11397.t1 | cds | g11397.t1.CDS11 | 15958546 | 15958605 |
| chr_1 | g11397 | g11397.t1 | TTS | g11397.t1 | 15959219 | 15959219 |
Sequences
>g11397.t1 Gene=g11397 Length=1401
ATGTCTGCAGAAAAAGGGCATATCAATCCAGCATTTAATGATGAACACGAAACAAATATC
ACATACTCAAATGTCCGAAAAAAGGATTTTGGTATGGAGATGAAGGGTAAACATGAGATC
TCTAAAGATGATTACGAGCCTTATAAGAATAGAAATGTTGAACATCCGACTACCAACTGG
GAGACATTTTTTCATTTGATGAAAGGTAGCTTAGGAACTGGGATTCTTGCTATGGCTAAT
GCCTTTAATGATGCTGGATATGTAGTTGGATGCATAGGAACAATCATAATTGGAGTACTT
TGTACATACTGTATTCATCAATTAATCAGTGCTGAATATGAGTTGTGCAAGAGAAAAAGA
GTACCAAGTTTAACCTACGTAGGAGTAACTGAAGCGGCGCTATTAGAAGGGCCAAAATGC
TTAAAACGTTTCTCAAGGCAAAGTGTCTACGTAGTGAATATTTTTCTCGTTATATATCAG
TTAGGGACATGTTGCGTATATGTTGTTTTTGTAGCTTCAAATATTAAACGCATAACTGAT
CTCCATACAGAAGAAGAAACTGATGTGAGGCTAATAATGCTATTCTTACTACTACCTCTA
ATTTTTCTCAATTGGATTCGTAATCTTAAATTCCTCGCACCATTTTCAACTTTTGCCAAT
TTTGTTACGTTAGTGTCATTTGGCCTTATTCTTTATTTCATTTTTGAAAAGCCATTTACA
TTAGAAGATAAGCATGCTTTCGCCTCTATTAAATCATTTCCATTATTCTTTGGAACTGTC
CTTTTTGCACTTGAGGCTATCGGAGTTATTTTACCATTAGAAAATGAAATGAAAACACCA
AAAGCTTTTGCTTCGAAATTTGGTGTTCTAAATCAAGCGATGATCATCATCATTGTTTTG
TATGTTGGCATGGGATTGTTTGGCTATTTGCGTTTTGGAACAGATGTTTTAGGTTCAATT
ACTTTAAATCTTCCTACCAATGATATAAAAGCACAATTAGTTCAGGGAATGTTAGCTTTT
GCTATATTCATCTCACATGGGTTAGCCTGTTATGTTGCTATTGATATTATTTGGAATAAT
TATTTAAGTCACAAAGTGACTTCGTCTAAACGATTTTGGGAATACATTACTCGTACACTT
TTAGTTTTTGTCACATTTTTATTAGCTGTTGCCATCCCAAATTTAGAATTGTTTATCTCT
CTTTTTGGTGCTCTATGCTTATCAGCTCTTGGCCTAGCTTTCCCAGCTTTAATTGAAACA
TGTGTATACTGGAACACAACACATGGATTTCAAAAAGCAATAATGATTACAAAAAATACC
ATTATAATCATTCTTTCACTTGTTGGCTTATTGAGTGGAACATTCACCAGCTTGAAAGAA
ATTATTCATACATTCTTCTAG
>g11397.t1 Gene=g11397 Length=466
MSAEKGHINPAFNDEHETNITYSNVRKKDFGMEMKGKHEISKDDYEPYKNRNVEHPTTNW
ETFFHLMKGSLGTGILAMANAFNDAGYVVGCIGTIIIGVLCTYCIHQLISAEYELCKRKR
VPSLTYVGVTEAALLEGPKCLKRFSRQSVYVVNIFLVIYQLGTCCVYVVFVASNIKRITD
LHTEEETDVRLIMLFLLLPLIFLNWIRNLKFLAPFSTFANFVTLVSFGLILYFIFEKPFT
LEDKHAFASIKSFPLFFGTVLFALEAIGVILPLENEMKTPKAFASKFGVLNQAMIIIIVL
YVGMGLFGYLRFGTDVLGSITLNLPTNDIKAQLVQGMLAFAIFISHGLACYVAIDIIWNN
YLSHKVTSSKRFWEYITRTLLVFVTFLLAVAIPNLELFISLFGALCLSALGLAFPALIET
CVYWNTTHGFQKAIMITKNTIIIILSLVGLLSGTFTSLKEIIHTFF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g11397.t1 | PANTHER | PTHR22950:SF340 | GLUTAMATE TRANSPORTER POLYPHEMUS-RELATED | 32 | 465 | 3.3E-179 |
| 3 | g11397.t1 | PANTHER | PTHR22950 | AMINO ACID TRANSPORTER | 32 | 465 | 3.3E-179 |
| 1 | g11397.t1 | Pfam | PF01490 | Transmembrane amino acid transporter protein | 55 | 454 | 8.0E-68 |
| 20 | g11397.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 84 | - |
| 29 | g11397.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 85 | 109 | - |
| 15 | g11397.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 110 | 148 | - |
| 27 | g11397.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 149 | 169 | - |
| 24 | g11397.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 170 | 188 | - |
| 25 | g11397.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 189 | 206 | - |
| 17 | g11397.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 207 | 217 | - |
| 28 | g11397.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 218 | 235 | - |
| 19 | g11397.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 236 | 254 | - |
| 30 | g11397.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 255 | 273 | - |
| 18 | g11397.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 274 | 292 | - |
| 34 | g11397.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 293 | 312 | - |
| 23 | g11397.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 313 | 331 | - |
| 26 | g11397.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 332 | 354 | - |
| 14 | g11397.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 355 | 374 | - |
| 31 | g11397.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 375 | 392 | - |
| 21 | g11397.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 393 | 397 | - |
| 32 | g11397.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 398 | 418 | - |
| 16 | g11397.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 419 | 438 | - |
| 33 | g11397.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 439 | 458 | - |
| 22 | g11397.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 459 | 466 | - |
| 8 | g11397.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 88 | 110 | - |
| 7 | g11397.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 149 | 171 | - |
| 5 | g11397.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 189 | 206 | - |
| 12 | g11397.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 213 | 235 | - |
| 4 | g11397.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 255 | 274 | - |
| 6 | g11397.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 287 | 309 | - |
| 9 | g11397.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 332 | 354 | - |
| 11 | g11397.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 375 | 392 | - |
| 10 | g11397.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 396 | 418 | - |
| 13 | g11397.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 439 | 458 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K14209 (solute carrier family 36 (proton-coupled amino acid transporter))
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed